BS25004.complete Sequence
985 bp assembled on 2011-06-27
GenBank Submission: KX803404
> BS25004.complete
GAAGTTATCAGTCGACATGGCTCTGGAAGCGATTTGCGGCATGAATAAAA
TGCCTTTTATGCGGCGCTTCGATGACTTGCAGTCCGAATGGCAGAAGGAG
CAGCTTCGCGAGGCAACCAGTAATTTTGAGAATCCCTACGAACTGATGGC
GCCTCCCTTCGAAAGGCCCGCTGAGAATCTGCCCAAGATCCTGTCGCACT
GTGGCATTCGCATGGATTTCGATCACGGCACCACCACTCTGGGTTTCAAG
TATCGCGGAGGAGTGATTCTGTGTGCTGATTCTAGGGCCACCTCTGGCCA
GTATATTGGATCACAGACGATGAGGAAAATAGTCGAGCTGAACGACTATA
TGCTGGGCACCTTGGCCGGCGGAGCCGCGGATTGCGTCTACTGGGATCGG
GTTTTGGCTAAGGAGTGTCGCCTGCACCAGCTGCGCTATCGGAAACGCAT
GACCGTGGACACGGCTGCCCGGATCATCTGCAACATATCCACGGAGTACA
AGGGCATGGGTCTGGTGATGGGCATGATGCTGGCCGGCTTCGACGACGAG
GGACCCAAGCTGATTTACGTGGACTCGGAGGGCATGAGATCCCATGGTCA
AGTCTTCTCCGTGGGCAGCGGTTCTCCATATGCGCTCGGCGTATTGGACA
CTGGGTACCGCTATGATCTCTCCGATCAGGAGGCCTATGACCTGGCCAGG
CGAGCGATTTACCATGCGACCAGTAAGGATGCCTATTCTGGTGGAATCGT
GCGTCTCTACCACATTCATTCGGAGGGCTGGCGAAATATCTGCAATACGG
ACTGCTCCGATCTCCATGACTCGTATTGCGCATCTGGGTGTCCGGGGAAC
GAGAAGGATGTAGGAAACGTAGGCGATCCCGACAATGATAAGCCCTGTTC
CAGTGGCTGGACGAAGAAGAATATCACAGCAGACAATTTGCAGACTAAGC
TGGCAACGGTATGAAAGCTTTCTAGACCATTAGTG
BS25004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta5R1-RA | 948 | CG9868-PA | 1..948 | 17..964 | 4665 | 99.5 | Plus |
| Prosbeta5-RA | 849 | CG12323-PA | 291..527 | 301..537 | 240 | 73.4 | Plus |
| Prosbeta5-RB | 849 | CG12323-PB | 291..527 | 301..537 | 240 | 73.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta5R1-RA | 1107 | CG9868-RA | 89..1038 | 17..966 | 4675 | 99.5 | Plus |
| Prosbeta5-RA | 1139 | CG12323-RA | 386..622 | 301..537 | 240 | 73.4 | Plus |
| Prosbeta5-RB | 1076 | CG12323-RB | 323..559 | 301..537 | 240 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23308723..23309523 | 966..166 | 3945 | 99.5 | Minus |
| 2R | 25286936 | 2R | 23309580..23309728 | 165..17 | 745 | 100 | Minus |
| 2R | 25286936 | 2R | 10820425..10820661 | 301..537 | 240 | 73.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:52:03 has no hits.
BS25004.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:20 Download gff for
BS25004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta5R-RA | 89..1040 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:22 Download gff for
BS25004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta5R1-RA | 89..1040 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:42 Download gff for
BS25004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta5R1-RA | 89..1040 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:42 Download gff for
BS25004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23308720..23309522 | 167..969 | 99 | <- | Minus |
| 2R | 23309579..23309728 | 17..166 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:22 Download gff for
BS25004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19196243..19197045 | 167..969 | 99 | <- | Minus |
| arm_2R | 19197102..19197251 | 17..166 | 99 | | Minus |
BS25004.pep Sequence
Translation from 16 to 963
> BS25004.pep
MALEAICGMNKMPFMRRFDDLQSEWQKEQLREATSNFENPYELMAPPFER
PAENLPKILSHCGIRMDFDHGTTTLGFKYRGGVILCADSRATSGQYIGSQ
TMRKIVELNDYMLGTLAGGAADCVYWDRVLAKECRLHQLRYRKRMTVDTA
ARIICNISTEYKGMGLVMGMMLAGFDDEGPKLIYVDSEGMRSHGQVFSVG
SGSPYALGVLDTGYRYDLSDQEAYDLARRAIYHATSKDAYSGGIVRLYHI
HSEGWRNICNTDCSDLHDSYCASGCPGNEKDVGNVGDPDNDKPCSSGWTK
KNITADNLQTKLATV*
BS25004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta5R1-PA | 315 | CG9868-PA | 1..315 | 1..315 | 1699 | 100 | Plus |
| Prosbeta5R2-PB | 279 | CG31742-PB | 1..274 | 1..274 | 924 | 58.8 | Plus |
| Prosbeta5R2-PA | 279 | CG31742-PA | 1..274 | 1..274 | 924 | 58.8 | Plus |
| Prosbeta5-PA | 282 | CG12323-PA | 1..272 | 1..270 | 882 | 61.2 | Plus |
| Prosbeta5-PB | 282 | CG12323-PB | 1..272 | 1..270 | 882 | 61.2 | Plus |
