Clone BS25033 Report

Search the DGRC for BS25033

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:250
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG13455-RA
Protein status:BS25033.pep: full length peptide match
Sequenced Size:1166

Clone Sequence Records

BS25033.complete Sequence

1166 bp assembled on 2011-09-14

GenBank Submission: KX806101

> BS25033.complete
GAAGTTATCAGTCGACATGAACCTGAGCACCCTTCTGAGGAGTGTGAGCA
ACGGTCTTGGCTTCGGAACCGTCACGAGAAAGAGCGACTTGGGTCGTCCC
CTGGCCCCTCTTAGCTCCACGTCGAGCTCGTCTTCAAATAATTCAAATTT
GGATCCCGTTTCCAGTCTCTTACTTCCCTCGGAGGACGAAGAGGACGAGC
CCATATCACTGGGCGAAAATCATCTGGCCTCAACTGATGCCAGCCTGAAC
AAAAACCAGGAGCCCAATCCCTACCAGCAGACCGTCCAACAGATACTGCG
ACTAGTGAATGAACTGGAGCACACAATTCACGAGGATCGGCAGCAGGAGT
TCAAGCTCCGAATGGCCCTCGATCGGCAGACAGAACGGGTTCAGGAACTG
GTGTTTTCACTGGACACGGAAAGGAAGCGAAACGAGCGACTGGTGCAGTT
GCTCCGGGGAATCGATAGCTCCAGTTCGAGTGAGAGCGATCCGGAGAAGA
GGGGCCCCAGTGGCTCCCATGTGAACTCCATTGGTGAGCTGTACGACTCC
ATCAGCCCACTGCTGATGCAACAGCGTTACGTTGAGCTCTCCGTGTCCCA
TCGCCAAAGTCGTCGGCAGTTAGCCAAGAGGGAAAAGGCTCTCAAGGTAC
TTCAAAGCAAAACGGAGCAGCTGCACTCCAAATACGACGAGCTATTCGAT
GAGTACCGGAGTGAACAGCGCCGTTTCGAGATGCTGTGCACTCGCTATAT
TCAAATGCAGTTGAAGAAGAAACAGCAAATCTTCAATCTAAAGAATACAC
TCGGTCAGGCTAGCGAGTGTATATTCCATGCCCAGGTGGTCATCGATGAG
TGTTGTCATGCGGAGAAGTCGCCCATTTCTCCGGAGAATCTGGAAATCTT
TCGCAGGAATCTGGAGTGCTTTATGGATGCGCTCAGGAACTGCTGCTGCC
TGCGAAAAGTCCACGAGCTTCAGCAGCAGCAGCGCAAAAAGGAGGAAATG
GAAAAGTGTCAGAACCAGAATCCAGTCGATGACTTGCTCACACCGAAGGC
CAGGGAACGCTCAAGTCAAGAGCAGAGTAGTGACACCTACATTCAGAATC
TCTCCAATCGACATCCTCGTATTCGACGTTACAGGCATTCAGCTCGTTAA
AAGCTTTCTAGACCAT

BS25033.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13455-RA 1134 CG13455-PA 1..1134 17..1150 5625 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13455-RA 1414 CG13455-RA 142..1276 17..1151 5630 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15497342..15497917 576..1151 2850 99.7 Plus
3L 28110227 3L 15496715..15497281 17..583 2790 99.5 Plus
Blast to na_te.dros performed on 2014-11-27 07:25:52 has no hits.

BS25033.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 12:05:31 Download gff for BS25033.complete
Subject Subject Range Query Range Percent Splice Strand
CG13455-RA 174..1305 17..1148 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:57 Download gff for BS25033.complete
Subject Subject Range Query Range Percent Splice Strand
CG13455-RA 142..1273 17..1148 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:27 Download gff for BS25033.complete
Subject Subject Range Query Range Percent Splice Strand
CG13455-RA 142..1273 17..1148 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:27 Download gff for BS25033.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15496715..15497274 17..576 99 -> Plus
3L 15497343..15497914 577..1148 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:57 Download gff for BS25033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15489815..15490374 17..576 99 -> Plus
arm_3L 15490443..15491014 577..1148 99   Plus

BS25033.pep Sequence

Translation from 16 to 1149

> BS25033.pep
MNLSTLLRSVSNGLGFGTVTRKSDLGRPLAPLSSTSSSSSNNSNLDPVSS
LLLPSEDEEDEPISLGENHLASTDASLNKNQEPNPYQQTVQQILRLVNEL
EHTIHEDRQQEFKLRMALDRQTERVQELVFSLDTERKRNERLVQLLRGID
SSSSSESDPEKRGPSGSHVNSIGELYDSISPLLMQQRYVELSVSHRQSRR
QLAKREKALKVLQSKTEQLHSKYDELFDEYRSEQRRFEMLCTRYIQMQLK
KKQQIFNLKNTLGQASECIFHAQVVIDECCHAEKSPISPENLEIFRRNLE
CFMDALRNCCCLRKVHELQQQQRKKEEMEKCQNQNPVDDLLTPKARERSS
QEQSSDTYIQNLSNRHPRIRRYRHSAR*

BS25033.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13455-PA 377 CG13455-PA 1..377 1..377 1926 100 Plus