BS25044.complete Sequence
1607 bp assembled on 2011-07-01
GenBank Submission: KX803188
> BS25044.complete
GAAGTTATCAGTCGACATGTCCTCGCCAGCCCCCAAATCGCCGGAGCTTT
CGGATAAAAGCAAGAAATACGACAGACAAATCAGGCTGTGGGGAGAGCAT
GGACAGACGCTATTGGAGGCAGCCACAGTATGTTTGGTGAATGTTACGGC
CGTCGGCTGTGAAACTGCCAAGGGACTGGTGCTACCCGGTATCGGAGGCT
TCACTGTGGCCGATGGCAGCACCGTCAAGGAGGAGGATCTGGGCAACAAT
TTCTTCCTCGATTCCAGCTATCTGGGCAAATCTAAAGCATTGGCTTGCAT
GCAACTTCTCCAGGAACTCAATCCCGACGTAAATGGCGATTATGTCGACG
AGAGTGCCGACTTTTTGTTAGCCAACAGACCGAACTTCTTCGACAGCTTC
GATTTAGTGATTGCCTCCAATCTCAATGAGCAGACTTTGCTTCTCTTGGC
CGAACGGTTATGGGAGCTTAACGTTCCATTAATCTACTGCCGATCGCTTG
GCATGCTGGGCACAATACGCTTGCAAATACGGGAACACTGCATCGTGGAG
GCGCATCCGGATAATCGACAGTTTGATCTGCGTCTGGAGCATCCATTCGA
TGCTTTGCGGGAGCATCTCGACGGCACCGAGGTGACCAGTAAGGTGCCCT
GGCTGCTGGTGCTTCACAAATATCTTAATGTGTGGCAAAAACAACAAGCG
GATGGGACTCAAACGCCTCGAAATTACAAAGAGAAGAATCAGTTGAAGGA
GACCATTAGAGAGGAGATGAAGGCGGATGAGGAAAACTATGAAGAGGCCA
TCAAGGCGGTCAATACAGCCTTTGGAGCGGGACAGGTTCCCAAAAGCCTG
AAAGCCATATTCGAAGATGATGCCTGCGAACAGTTAAACAAGAAGAGCAA
CGTCTTTTGGATCATGGCCAAGGCCCTAAAGCACTTTGTGATACATGAGA
ATGAGGGCCATCTCCCTCTGCCTGGCGTTCTGCCGGACATGACTGCCAAT
ACGGACTCCTATATCGCCCTGCAGCACATCTACCGCCAACAGGCGCTGCA
AGACGCCGACCAGGTGTATCACAAGTGCCAGGAGTACCTTAAGCAGTTGG
CTTTGCCTGCCGACAGCATTGATGAGAGAAGTGTGCGTCTCATTTGCAAA
GAAGCAGCCGGACTGGCGGTCATAAGGGGTACACGCATTGCAGAGGAGTA
CGAGAAGAGCAGTCGCCTGCTACCACTGGTTGAGGACAACGAGCTGCAGG
GCAACCTCACGGCATACAACTTTGCGCTGCGCGCCTACGAGCGCTTCCTC
AGCGAGTGTGGCAACATTCCCGGCGAGTGCATCGTTGAGCAGGACATTGG
ACGTCTGAAGAGCATTGCCGCCAAGATGCTAAGCGATTTGGGCATGCACG
CCACCATCAGCGATGATGTTCTGCACGAGATTTGTCGATATGGCGGAGCT
GAGTTGCATGCAGTGTCTGCTTTTATTGGTGGCTGCGCTGCCCAGGAGGT
GATCAAGATCATTACGAAGCAATACAAGCCAATCGATAATACTTTTATAT
ACAATGCTATAACCACAGAAAGTGTCACATTGAAGCTATAAAAGCTTTCT
AGACCAT
BS25044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APP-BP1-RA | 1575 | CG7828-PA | 1..1575 | 17..1591 | 7755 | 99.5 | Plus |
| APP-BP1-RB | 1575 | CG7828-PB | 1..1575 | 17..1591 | 7755 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APP-BP1-RA | 1867 | CG7828-RA | 274..1849 | 17..1592 | 7760 | 99.5 | Plus |
| APP-BP1-RB | 1650 | CG7828-RB | 57..1632 | 17..1592 | 7760 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11099031..11099676 | 250..895 | 3155 | 99.2 | Plus |
| 3L | 28110227 | 3L | 11099741..11100076 | 894..1229 | 1680 | 100 | Plus |
| 3L | 28110227 | 3L | 11100138..11100389 | 1229..1480 | 1230 | 99.2 | Plus |
| 3L | 28110227 | 3L | 11098808..11098974 | 83..249 | 835 | 100 | Plus |
| 3L | 28110227 | 3L | 11100446..11100560 | 1478..1592 | 575 | 100 | Plus |
| 3L | 28110227 | 3L | 11098685..11098753 | 17..85 | 330 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:42:11 has no hits.
BS25044.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-01 14:13:08 Download gff for
BS25044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APP-BP1-RA | 274..1846 | 17..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:33 Download gff for
BS25044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APP-BP1-RB | 57..1629 | 17..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:29 Download gff for
BS25044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APP-BP1-RB | 57..1629 | 17..1589 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:29 Download gff for
BS25044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11098810..11098974 | 85..249 | 100 | -> | Plus |
| 3L | 11098685..11098752 | 17..84 | 98 | -> | Plus |
| 3L | 11099031..11099676 | 250..895 | 99 | -> | Plus |
| 3L | 11099743..11100076 | 896..1229 | 100 | -> | Plus |
| 3L | 11100139..11100387 | 1230..1478 | 99 | -> | Plus |
| 3L | 11100447..11100557 | 1479..1589 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:33 Download gff for
BS25044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11091785..11091852 | 17..84 | 98 | -> | Plus |
| arm_3L | 11091910..11092074 | 85..249 | 100 | -> | Plus |
| arm_3L | 11092131..11092776 | 250..895 | 99 | -> | Plus |
| arm_3L | 11092843..11093176 | 896..1229 | 100 | -> | Plus |
| arm_3L | 11093239..11093487 | 1230..1478 | 99 | -> | Plus |
| arm_3L | 11093547..11093657 | 1479..1589 | 100 | | Plus |
BS25044.pep Sequence
Translation from 16 to 1590
> BS25044.pep
MSSPAPKSPELSDKSKKYDRQIRLWGEHGQTLLEAATVCLVNVTAVGCET
AKGLVLPGIGGFTVADGSTVKEEDLGNNFFLDSSYLGKSKALACMQLLQE
LNPDVNGDYVDESADFLLANRPNFFDSFDLVIASNLNEQTLLLLAERLWE
LNVPLIYCRSLGMLGTIRLQIREHCIVEAHPDNRQFDLRLEHPFDALREH
LDGTEVTSKVPWLLVLHKYLNVWQKQQADGTQTPRNYKEKNQLKETIREE
MKADEENYEEAIKAVNTAFGAGQVPKSLKAIFEDDACEQLNKKSNVFWIM
AKALKHFVIHENEGHLPLPGVLPDMTANTDSYIALQHIYRQQALQDADQV
YHKCQEYLKQLALPADSIDERSVRLICKEAAGLAVIRGTRIAEEYEKSSR
LLPLVEDNELQGNLTAYNFALRAYERFLSECGNIPGECIVEQDIGRLKSI
AAKMLSDLGMHATISDDVLHEICRYGGAELHAVSAFIGGCAAQEVIKIIT
KQYKPIDNTFIYNAITTESVTLKL*
BS25044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APP-BP1-PA | 524 | CG7828-PA | 1..524 | 1..524 | 2718 | 100 | Plus |
| APP-BP1-PB | 524 | CG7828-PB | 1..524 | 1..524 | 2718 | 100 | Plus |
| Aos1-PA | 337 | CG12276-PA | 18..179 | 14..178 | 188 | 29.9 | Plus |
