BS25058.complete Sequence
1295 bp assembled on 2011-06-27
GenBank Submission: KX804764
> BS25058.complete
GAAGTTATCAGTCGACATGTCCCAGGAAATCAATAGAAGCGCACAAGTGG
TGCCCGCTTGGCTCACTCGCGACTATGTGGAGCAGAAGCTGCGTTCCTAC
TTTAGAAATGACTCCCTCCGCCTGGTGAACCTGGACATCAAGCTGGCCCT
TGGCAACGGGGAGAACTACTCAAGCGTGATAACTCGCATCTATGTGGAGT
ATACGACGGATAAATCAAAGGATAAACAATCCACCAGATTCCTGGTGAAA
GAGAGTTTCGCCGACGCAGGTCCGGCGGCGCAGGTTCTCCTGAGCTACGT
AGTGTACAACAGGGAATTGGATCTGTATGAGCGCATCCTGCCCCAGATGG
CGGAAGTGGTGCGAAATGAGCTGGCAGATTCCCGGAAACTATTTGCAGGC
ACTGTTTATGTTGATCGGAAACGGGACTCGATCATCTTTGAGGATATGTC
GCTGGAGAATTACAGAGTGGCCGATCGGCTCAAGAAACTGGATCTGGAGC
ACACTCATCTGGTACTCGAGAAGCTGGCCAATTTCCATGCAGCCGGAGCA
GCCTTGGCTGAGCGCCAGCCTGGAATCTTTGCGAAGAATTTCGATCGTGG
ATTCTTTAACCAGCATACCCGCGGCTACGAGCCCATCATGAAGAATCTTC
TGATGGCTTTGTCCCGATCCCTGGAGCTGGAGCCGGATCTGTGTCAGCGT
TACCAGGCAAAGATCGATCGATTGGTGGAGAACGTAATGGAGTACGGAGA
ACGATCGACGACCATTGTTCCCGGTGACTTTTTGACCCTGGCTCACGGGG
ATCTCTGGACCACCAATATTATGTTCCAATACGACGACAAAGGACATCCC
ATAAATGCCATCTTTATCGACTTTCAGTTCAGTGCTTGGAACTCGCCGGC
CATCGATCTACACTACTTCTTTTCAACGGCCTTGCAGGCTGATATTCGAC
TGAAGAAACAGCCAGAGCTGGTCCAGTTCTACTATTACAAACTGAAGGCT
GCCTTGAAGAAAGTCCAGTATTCCGGAAATGTTCCGAGCCTATTCGTCTT
CCATCAGCAGTTCAGGAACAGATCCTTCTATGCTGCCTTCGCATCACTGA
TCTTCGAACCAACGATGACGTACACGGGCAAGGAAGAGGCATCAATGGAT
CAGATAATATCCCTTTCGGAGAAGGGAATGCGCTTTAAGGATGACGCATT
TCAGGCGGAGGAGACCAGGAAAAAGATGCGTCTCACTTTGCCCTTTCTTG
ATCATTTGGGTTTACTAGACGTGATGTAAAAGCTTTCTAGACCAT
BS25058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11891-RE | 1255 | CG11891-PE | 6..1255 | 22..1279 | 5940 | 98.3 | Plus |
| CG11891-RD | 1255 | CG11891-PD | 6..1255 | 22..1279 | 5940 | 98.3 | Plus |
| CG11889-RB | 1254 | CG11889-PB | 136..1254 | 161..1279 | 1035 | 72.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11891-RE | 1337 | CG11891-RE | 6..1256 | 22..1280 | 5945 | 98.3 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 1591..2841 | 22..1280 | 5945 | 98.3 | Plus |
| CG11889-RA | 2944 | CG11889-RA | 1613..2863 | 22..1280 | 5945 | 98.3 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 136..1254 | 161..1279 | 1035 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25271879..25272931 | 22..1082 | 4970 | 98.1 | Plus |
| 3R | 32079331 | 3R | 25270366..25271198 | 161..993 | 985 | 74.5 | Plus |
| 3R | 32079331 | 3R | 25272988..25273186 | 1082..1280 | 980 | 99.5 | Plus |
| 3R | 32079331 | 3R | 25274004..25274779 | 173..948 | 790 | 73.5 | Plus |
| 3R | 32079331 | 3R | 25269008..25269713 | 377..1082 | 680 | 73.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:54:08 has no hits.
BS25058.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:24 Download gff for
BS25058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11891-RE | 1..1253 | 19..1277 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:56 Download gff for
BS25058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11891-RD | 1584..2838 | 17..1277 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:23 Download gff for
BS25058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11889-RA | 1606..2860 | 17..1277 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:23 Download gff for
BS25058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25271872..25272931 | 17..1082 | 98 | -> | Plus |
| 3R | 25272989..25273183 | 1083..1277 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:56 Download gff for
BS25058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21097594..21098653 | 17..1082 | 98 | -> | Plus |
| arm_3R | 21098711..21098905 | 1083..1277 | 99 | | Plus |
BS25058.pep Sequence
Translation from 16 to 1278
> BS25058.pep
MSQEINRSAQVVPAWLTRDYVEQKLRSYFRNDSLRLVNLDIKLALGNGEN
YSSVITRIYVEYTTDKSKDKQSTRFLVKESFADAGPAAQVLLSYVVYNRE
LDLYERILPQMAEVVRNELADSRKLFAGTVYVDRKRDSIIFEDMSLENYR
VADRLKKLDLEHTHLVLEKLANFHAAGAALAERQPGIFAKNFDRGFFNQH
TRGYEPIMKNLLMALSRSLELEPDLCQRYQAKIDRLVENVMEYGERSTTI
VPGDFLTLAHGDLWTTNIMFQYDDKGHPINAIFIDFQFSAWNSPAIDLHY
FFSTALQADIRLKKQPELVQFYYYKLKAALKKVQYSGNVPSLFVFHQQFR
NRSFYAAFASLIFEPTMTYTGKEEASMDQIISLSEKGMRFKDDAFQAEET
RKKMRLTLPFLDHLGLLDVM*
BS25058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11891-PE | 420 | CG11891-PE | 1..420 | 1..420 | 2154 | 100 | Plus |
| CG11891-PD | 420 | CG11891-PD | 1..420 | 1..420 | 2154 | 100 | Plus |
| CG11889-PB | 417 | CG11889-PB | 10..417 | 13..420 | 1543 | 69.6 | Plus |
| CG11889-PA | 417 | CG11889-PA | 10..417 | 13..420 | 1543 | 69.6 | Plus |
| CG11878-PA | 420 | CG11878-PA | 1..420 | 1..420 | 1480 | 67.1 | Plus |
