BS25103.complete Sequence
2657 bp assembled on 2011-08-04
GenBank Submission: KX802967
> BS25103.complete
GAAGTTATCAGTCGACATGTCAGATGCCATGAGTGCTCCGCCGCCCCTTA
TTCCGCAGCTGCAGGAGATGCAGCAACAGCAGCAGCAGAGCGCTAATCCC
GCCCAGCTCGCCCAGCAGTGGAGCAATTACGCCTGGTATGCCAACCAAAA
TGCTGCTTACCAGCAGCAGTATCAGCAGTACTACCAGTACTACGTACGCT
ACCAGCAGCAGCAGCAACAGCAGGTAACCTCGACGGTCAGTACGTCAAAT
GCGCCGCCGGGCTTCAGCAATGCGTTGGCTGCACCGCCGCCTCTGCCCTC
AGGGCCGCCCCCTCCGCCTCCGCCGCAAATAGGTCAGCCACCTGGCCAAA
ACAAACAACAACAACAACAACAACAGCAACAACAATTACAACAACAACAG
CAGCAACAACAACAACAGCAGCAGCAGCAGCAAAAAAATTTCGGGGGAAT
ACGTTTTAATTTGAATTTAAACCAAAAGCGTTTGGCCGGTGCTCCTAATC
CCCTGCAGCAACAACAACAGCAGCAGCATCAACAACAACAACATCAACAA
CAGCAACAGGTCATGCAATTGTACAATAACAACAACAGCAACAAAAAGAA
GCGCAAGCGGAATAACAAAAACAAGAACTTTGAGCAATCAACATACAGCA
ATCCGTTTGCCAATCAAACCCCAGCCACACCCCAAGCTCCACCGCCGCCC
ATCATTAGCGCCAGCGATGTAGGTGTACCAATTAATCCGGACTTGAGCAA
ACCACCACCTCCATTACCCCTGGCCATTGTGGCACCCACAGAGAATCCCC
AACACCAGAAGCAGCAGCAGCAGGAGCACATGGCAGCACAAAGAGCGGGA
GAGGCTACATCCCAAACATCAAATTTTAAGCGGCCAAACAGTTTTCAAAT
GGCTTCAAGCGACTCCTGGCCGAATTCCCTCAACCAATATGTTGCTCGTT
GCTATTCAAAGTGCAACACTGATCTGGATAAGGATCAGATCGACATATGT
CTGAAAGGCAAGATTATAGCGGCGGCCAATCGCAACGAGCTGTGGACACG
CGATTGGGATAACGAGCCCATGCCGACGGTGTACAGCGAGAGAGACGGCA
TTGATGTGGTGCTAAGCAATGTGCCACCGCCGCAGCAGCAGCGAAGCAAC
TACTTTCAGAAGAAGCAAGAACAGGAGAGGGAGCGAGAGAGAGACCGCGA
AGCGGATAAGTCACCTGCCAAAGGTTCCACGGGTATAGTGAATCAGTTCA
AGCAGAAGGGCAATCAGTTCAACAAGGCCTCGTCCAGCTACGGTTCTCAT
CACTCTTCGTCGTCCAAGTACTCCAGGAGTCGGTCGCGGTCGCCGTCATC
TTCAAACTCGTTAAAGTACTCGAGCAAGAAGCGGTACTCGCGTTCGCGCT
CTCGTTCGCGTTCCCGTTCGCGATCCCCCCGCTCCCGATCGTGTTCCCGC
AGTAGCGATGCCAGCAGTCCACCGGCGCGTAAGATTATTCGCAAATCGGG
CTCGAACGAATCTCTGAATTTCATACCACTCACCGCGAATTTATCCCGCA
AGCAGCAAAAAATGCTGATGAAGAAGGGCAAGCGCGCAGCTGCTATGGCC
TCAGCACAGATGAAAAAAAAGGACACACCTCACTTTTACTCCAATCAGTC
GTCTGTTGGCGGTGCCGTTGATGATGACACAGCGCGCTTGCAACAGCGTG
CGGCACGATTCTCACAGCAGGGCTCCAGCTCGGCCAAAAAATCGGTCGTC
GCCATTGCAAGCTCACCGTTTGGTCTCACCACGGCCAAGAACAAGAAGAA
AATGGTGCAGCAACACCAGCAGCACCAACGGTCAGCTTTCTACGAAGACA
CAGAGGCGGCTAGCGGTATAGATCTTCTCGATTTACACATTGTAGGAACT
TGTAGGGATCTAGAAAAGTCATTTTTGCGTCTTACAAAGGCGCCGTCTCC
GTCAGAGGTGCGACCTGTCGAGGTGCTCACCCATTCGCTTGTTAATGTGA
AAGGAAAATGGCGTGCCAATCAGGATTATCACTACGCGTGTGATCAGCTT
AAGTCCATAAGGCAGGATTTGACTGTCCAGGGTATTCGTGATCAGTTTAC
GGTTGAGGTGTACGAGACACACGCACGCATTGCCATGGAGAAGGGTGACC
ACGAGGAGTTCAATCAGTGCCAGACGCAACTTAAGATGCTGTACATGGAG
ATCGGTGGTAAAAACGCCAATGCCCTCGAGTTCACCGCCTATCGCATACT
CTACTACATTTTCACAAAGAATACTCTGGACATCACCACTGTCATGCGTT
CGATTACGGCTGATCAACGTGAAAATCCTGTCATTGCGCACGCTCTTCAG
TTCCGATCTGCGTGGTCGCTGGGCAACTACTGCAAATTGTTTTCCCTGTA
CAGGACGGCGCCTCTTATGTCCGGCCACATGATTGAATGGTTCCTGGAGA
GAGAGCGCAAAGCTGCATTGCGAGTCATTATTAAGTCTTATCGTCCTAAC
ATTAGCGTTGACTATATTACCAAAATTCTGGCTTTCGATAGCTCAGAAAA
GTGCAAGGAATGGCTCGACACTTTCAGTTTGCCATATGCCGCCGATGGTG
CGCAAGTTGATTGCAAAAATGCAGCTGCTATTGCTATTTGAAAGCTTTCT
AGACCAT
BS25103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6700-RB | 2625 | CG6700-PB | 1..2625 | 17..2641 | 13125 | 100 | Plus |
| CG6700-RA | 2625 | CG6700-PA | 1..2625 | 17..2641 | 13125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6700-RB | 4379 | CG6700-RB | 298..2924 | 16..2642 | 13135 | 100 | Plus |
| CG6700-RA | 4511 | CG6700-RA | 302..2928 | 16..2642 | 13135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10840865..10842189 | 1340..16 | 6625 | 100 | Minus |
| 2L | 23513712 | 2L | 10840059..10840797 | 2076..1338 | 3695 | 100 | Minus |
| 2L | 23513712 | 2L | 10839533..10839741 | 2487..2279 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 10839801..10840005 | 2279..2075 | 1025 | 100 | Minus |
| 2L | 23513712 | 2L | 10839315..10839469 | 2642..2488 | 775 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2887 | 22..643 | 345 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..7091 | 56..416 | 238 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2916 | 335..652 | 228 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2408 | 783..872 | 152 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1085..1156 | 800..872 | 146 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2410 | 790..871 | 131 | 64.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1131 | 799..871 | 128 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6966 | 56..233 | 126 | 58.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1094 | 56..89 | 125 | 85.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1113 | 56..87 | 124 | 87.5 | Plus |
BS25103.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 17:43:36 Download gff for
BS25103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6700-RB | 305..2928 | 17..2640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:45 Download gff for
BS25103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6700-RA | 303..2926 | 17..2640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:45 Download gff for
BS25103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6700-RA | 303..2926 | 17..2640 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:45 Download gff for
BS25103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10839533..10839740 | 2280..2487 | 100 | <- | Minus |
| 2L | 10839801..10840005 | 2075..2279 | 100 | <- | Minus |
| 2L | 10839317..10839469 | 2488..2640 | 100 | <- | Minus |
| 2L | 10840061..10840796 | 1339..2074 | 100 | <- | Minus |
| 2L | 10840867..10842188 | 17..1338 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:45 Download gff for
BS25103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10839533..10839740 | 2280..2487 | 100 | <- | Minus |
| arm_2L | 10839801..10840005 | 2075..2279 | 100 | <- | Minus |
| arm_2L | 10839317..10839469 | 2488..2640 | 100 | <- | Minus |
| arm_2L | 10840061..10840796 | 1339..2074 | 100 | <- | Minus |
| arm_2L | 10840867..10842188 | 17..1338 | 100 | | Minus |
BS25103.pep Sequence
Translation from 16 to 2640
> BS25103.pep
MSDAMSAPPPLIPQLQEMQQQQQQSANPAQLAQQWSNYAWYANQNAAYQQ
QYQQYYQYYVRYQQQQQQQVTSTVSTSNAPPGFSNALAAPPPLPSGPPPP
PPPQIGQPPGQNKQQQQQQQQQQLQQQQQQQQQQQQQQQKNFGGIRFNLN
LNQKRLAGAPNPLQQQQQQQHQQQQHQQQQQVMQLYNNNNSNKKKRKRNN
KNKNFEQSTYSNPFANQTPATPQAPPPPIISASDVGVPINPDLSKPPPPL
PLAIVAPTENPQHQKQQQQEHMAAQRAGEATSQTSNFKRPNSFQMASSDS
WPNSLNQYVARCYSKCNTDLDKDQIDICLKGKIIAAANRNELWTRDWDNE
PMPTVYSERDGIDVVLSNVPPPQQQRSNYFQKKQEQERERERDREADKSP
AKGSTGIVNQFKQKGNQFNKASSSYGSHHSSSSKYSRSRSRSPSSSNSLK
YSSKKRYSRSRSRSRSRSRSPRSRSCSRSSDASSPPARKIIRKSGSNESL
NFIPLTANLSRKQQKMLMKKGKRAAAMASAQMKKKDTPHFYSNQSSVGGA
VDDDTARLQQRAARFSQQGSSSAKKSVVAIASSPFGLTTAKNKKKMVQQH
QQHQRSAFYEDTEAASGIDLLDLHIVGTCRDLEKSFLRLTKAPSPSEVRP
VEVLTHSLVNVKGKWRANQDYHYACDQLKSIRQDLTVQGIRDQFTVEVYE
THARIAMEKGDHEEFNQCQTQLKMLYMEIGGKNANALEFTAYRILYYIFT
KNTLDITTVMRSITADQRENPVIAHALQFRSAWSLGNYCKLFSLYRTAPL
MSGHMIEWFLERERKAALRVIIKSYRPNISVDYITKILAFDSSEKCKEWL
DTFSLPYAADGAQVDCKNAAAIAI*
BS25103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6700-PB | 874 | CG6700-PB | 1..874 | 1..874 | 4557 | 100 | Plus |
| CG6700-PA | 874 | CG6700-PA | 1..874 | 1..874 | 4557 | 100 | Plus |
| CG10543-PD | 1631 | CG10543-PD | 1121..1453 | 8..298 | 238 | 28 | Plus |
| CG10543-PE | 1634 | CG10543-PE | 1124..1456 | 8..298 | 238 | 28 | Plus |
| CG10543-PA | 1634 | CG10543-PA | 1124..1456 | 8..298 | 238 | 28 | Plus |
| CG10543-PD | 1631 | CG10543-PD | 1046..1442 | 8..448 | 186 | 20.9 | Plus |
| CG10543-PE | 1634 | CG10543-PE | 1049..1445 | 8..448 | 186 | 20.9 | Plus |
