BS25107.complete Sequence
1499 bp assembled on 2012-04-25
GenBank Submission: KX802316
> BS25107.complete
GAAGTTATCAGTCGACATGGCTTTCCTATGTGCACCGGGTCTCACCTTCT
TCCTCACCTACTCGATTTTCTCGGCGGTGCTGGGCATGCTGCAATTCGGC
TACAACACCGGCGTCATCAACGCGCCCGAAAAGAATATCGAGAACTTCAT
GAAGGACGTCTACAAGGACCGCTACGGCGAGGACATCAGCGAGGAGTTCA
TCCAGCAGCTCTACTCGGTGGCGGTATCCATTTTCGCCATCGGCGGCATG
CTGGGCGGTTTCAGCGGAGGCTGGATGGCCAACCGCTTTGGCAGAAAAGG
CGGCCTACTGTTGAACAATGTGCTCGGAATTGCCGGCGCCTGTTTGATGG
GATTTACCAAAGTTAGTCATTCCTATGAAATGTTATTCCTTGGCCGATTT
ATAATTGGTGTTAATTGCGGCCTCAACACTTCGCTGGTGCCCATGTACAT
CTCGGAGATAGCGCCACTGAATCTGCGCGGTGGCTTAGGAACTGTTAATC
AATTGGCTGTGACTGTAGGTTTACTATTATCCCAAGTGCTGGGCATCGAG
CAAATCCTCGGCACCAACGAGGGCTGGCCCATCCTCCTGGGCCTGGCCAT
CTGCCCGGCGATCCTGCAGCTGATCCTGCTGCCCGTCTGCCCGGAATCGC
CCAGATATCTGCTCATTACCAAGCAGTGGGAGGAGGAGGCGCGAAAAGCC
CTGCGCCGACTGCGAGCCTCTGGGTCCGTGGAGGAGGACATCGAGGAGAT
GCGGGCCGAGGAGCGCGCCCAGCAGTCCGAGAGCCACATATCGACCATGG
AGCTGATATGCTCGCCCACCCTGCGCCCTCCGCTGATCATCGGCATCGTG
ATGCAGCTGAGCCAGCAATTCAGCGGCATCAACGCCGTCTTCTACTATTC
CACGTCGCTGTTCATGAGCTCGGGATTGACTGAGGAGAGCGCCAAGTTCG
CTACGATAGGCATCGGCGCCATAATGGTTGTTATGACGCTCGTGTCCATT
CCGCTAATGGATCGCACGGGTCGCCGGACCCTGCATCTCTATGGTCTGGG
CGGAATGTTCATCTTCTCAATCTTCATCACCATTTCGTTCCTGATCAAGG
AGTTCTTTGGTTATGTGCAGGAAATGATCGACTGGATGTCCTACCTCTCT
GTGGTGGCCACTCTCGGATTCGTCGTCTTCTTTGCGGTGGGACCCGGTTC
GATACCCTGGATGATTACCGCGGAGCTCTTCTCCCAGGGACCCCGGCCCA
GTGCCATGGCTATTGCGGTGCTGGTCAACTGGATGGCCAACTTTGTGGTC
GGCATTGGTTTCCCCAGCATGAAGACTGCCCTGGAGAACTACACGTTCTT
GCCGTTCAGCGTATTCCTGGCCATCTTCTGGATATTCACGTACAAGAAGG
TGCCCGAGACGAAGAACAAGACGTTCGAGGAGATCCTGGCCCTCTTCCGG
CACAACAATGGCAGGTATGTGTCCTTGCACTAGAAGCTTTCTAGACCAT
BS25107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glut1-RE | 1467 | CG43946-PE | 1..1467 | 17..1483 | 7335 | 100 | Plus |
| Glut1-RR | 2409 | CG43946-PR | 883..2309 | 38..1464 | 7135 | 100 | Plus |
| Glut1-RO | 1716 | CG43946-PO | 190..1616 | 38..1464 | 7135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glut1-RE | 2188 | CG43946-RE | 577..2047 | 13..1483 | 7340 | 99.9 | Plus |
| Glut1-RR | 3380 | CG43946-RR | 1693..3119 | 38..1464 | 7135 | 100 | Plus |
| Glut1-RO | 2649 | CG43946-RO | 962..2388 | 38..1464 | 7135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 981824..982105 | 697..978 | 1410 | 100 | Plus |
| 3L | 28110227 | 3L | 981486..981765 | 419..698 | 1400 | 100 | Plus |
| 3L | 28110227 | 3L | 980950..981207 | 37..294 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 983832..984058 | 1098..1324 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 984135..984295 | 1323..1483 | 805 | 100 | Plus |
| 3L | 28110227 | 3L | 981292..981421 | 291..420 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 982174..982298 | 976..1100 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:00:30 has no hits.
BS25107.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:06 Download gff for
BS25107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glut1-RE | 579..2045 | 17..1483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:04 Download gff for
BS25107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glut1-RE | 581..2047 | 17..1483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:23 Download gff for
BS25107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glut1-RE | 581..2047 | 17..1483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:23 Download gff for
BS25107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 967517..967537 | 17..37 | 100 | -> | Plus |
| 3L | 980951..981207 | 38..294 | 100 | -> | Plus |
| 3L | 981296..981420 | 295..419 | 100 | -> | Plus |
| 3L | 981487..981765 | 420..698 | 100 | -> | Plus |
| 3L | 981826..982103 | 699..976 | 100 | -> | Plus |
| 3L | 982175..982301 | 977..1102 | 98 | -> | Plus |
| 3L | 983837..984058 | 1103..1324 | 100 | -> | Plus |
| 3L | 984137..984295 | 1325..1483 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:04 Download gff for
BS25107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 984137..984295 | 1325..1483 | 100 | | Plus |
| arm_3L | 967517..967537 | 17..37 | 100 | -> | Plus |
| arm_3L | 980951..981207 | 38..294 | 100 | -> | Plus |
| arm_3L | 981296..981420 | 295..419 | 100 | -> | Plus |
| arm_3L | 983837..984058 | 1103..1324 | 100 | -> | Plus |
| arm_3L | 981487..981765 | 420..698 | 100 | -> | Plus |
| arm_3L | 981826..982103 | 699..976 | 100 | -> | Plus |
| arm_3L | 982175..982301 | 977..1102 | 98 | -> | Plus |
BS25107.pep Sequence
Translation from 16 to 1482
> BS25107.pep
MAFLCAPGLTFFLTYSIFSAVLGMLQFGYNTGVINAPEKNIENFMKDVYK
DRYGEDISEEFIQQLYSVAVSIFAIGGMLGGFSGGWMANRFGRKGGLLLN
NVLGIAGACLMGFTKVSHSYEMLFLGRFIIGVNCGLNTSLVPMYISEIAP
LNLRGGLGTVNQLAVTVGLLLSQVLGIEQILGTNEGWPILLGLAICPAIL
QLILLPVCPESPRYLLITKQWEEEARKALRRLRASGSVEEDIEEMRAEER
AQQSESHISTMELICSPTLRPPLIIGIVMQLSQQFSGINAVFYYSTSLFM
SSGLTEESAKFATIGIGAIMVVMTLVSIPLMDRTGRRTLHLYGLGGMFIF
SIFITISFLIKEFFGYVQEMIDWMSYLSVVATLGFVVFFAVGPGSIPWMI
TAELFSQGPRPSAMAIAVLVNWMANFVVGIGFPSMKTALENYTFLPFSVF
LAIFWIFTYKKVPETKNKTFEEILALFRHNNGRYVSLH*
BS25107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glut1-PE | 488 | CG43946-PE | 1..488 | 1..488 | 2498 | 100 | Plus |
| Glut1-PB | 481 | CG43946-PB | 1..481 | 1..488 | 2441 | 98.6 | Plus |
| Glut1-PC | 481 | CG43946-PC | 1..481 | 1..488 | 2441 | 98.6 | Plus |
| Glut1-PR | 802 | CG43946-PR | 288..769 | 1..482 | 2435 | 99.2 | Plus |
| Glut1-PO | 571 | CG43946-PO | 59..538 | 3..482 | 2428 | 99.2 | Plus |
