BS25109.complete Sequence
3146 bp assembled on 2011-08-04
GenBank Submission: KX803826
> BS25109.complete
GAAGTTATCAGTCGACATGGCCATAGAGTCACGCTCTACGAGCACTGCAA
GTGAAACCACAAAAACCGCCATAAAATCAACCACAAGCTCAAAATCTCCA
GTAACATTCGGTAATCTCGGCGAGAAAAGACGCGCCGAACAGCTGTTCCG
CTGCGCATGCGCCAACTTCAATCTCCTGCTCCTGACTTTAATGCTCGGAT
TCGGCAAATGCTGCACTGCCACGCCCACGCCGCTGAACACGCCCTCAACG
AACACGCCCACCTCGGCAGTTAGCCCACATAATCCACAAACGCTGGACGA
GAGCGGATCGCTGAGCAAGGTGATCGATGGCAAAGCCTTCATCAACATGG
GATTCAAGTTCCTCAACGTTTCCGGAAAGATTGGCACACCCCTCGGCATA
GGCCAATCCCTGGAGGCCAAGTGCGATGAGAAGCAGTTCCAGTGCCACAG
CGGCGACTGCATACCCATTCGATTCGTTTGCGACGGCGATGCGGACTGCA
AGGATCACAGCGATGAGCAGATTAAGGAGTGCAAGTTTATAGAGGCCACT
TGCTCGTCGGACCAATTCCGTTGCGGGAATGGCAACTGCATACCGAACAA
ATGGCGCTGCGATCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCA
ACGAATTGTGCAGAGCTCGAACCTGTTCACCGGATGAATATGCCTGCAAG
AGTGGCGAGGGGCAATGTGTTCCTTTGGCCTGGATGTGCGACCAGAGCAA
GGACTGCAGCGATGGCTCCGACGAGCACAACTGCAACCAGACCTGTCGTG
CCGACGAGTTCACCTGCGGCAATGGACGGTGCATCCAGAAGCGATGGAAG
TGCGACCACGACGACGACTGCGGCGATGGATCCGACGAGAAGGAGTGCCC
AGTGGTGCCCTGCGACTCCGTGGCGGAGCACACCTGCACGAATGGAGCCT
GCATCGCCAAGCGGTGGGTCTGCGACGGTGATCCGGACTGCTCCGATGGC
TCCGATGAGCGGTCCTGTGCGAATGTGACCAAGACGACCACGCCCTGCTT
ATCGCACGAATACCAGTGCAAGGATCGCATCACCTGCCTGCATCACAGCT
GGCTCTGCGATGGTGACCGCGACTGTCCCGATGGCGACGATGAGCACACA
GCCAACTGCAAGAACGTCACCTGCCGGGCGGACCAGTTCCAGTGCGGCGA
TCGCAGCTGCATTCCAGGACATCTCACCTGCAACGGCGACAAGGACTGCG
CCGATGGCAGCGACGAACGGGATTGCGGATTGAGTCTGAGTCTGGGGATC
AACCAAGGAGGATGCAACGCAACCAGCGAATTCGACTGCGGTGGAGGTCA
GTGCGTTCCACTCTCGAAGGTCTGCGACAAGAGGAAGGATTGTCCGGATG
GCGAGGACGAGCCGGCAGGAAAGTGCGGGATAAACGAGTGCGCCTCGAAG
AACGGAGGCTGCATGCACCAGTGCATCGATCTGAAGGTGGGCCACCACTG
CGAATGCCACGAGGGTTACAAGTTGTCTCCGGACAAGCGGAACTGCCAGG
ATATCAATGAGTGCGAAGTTCCCGGAAAGTGCTCTCAGATATGCGTGAAC
GAAATAGGAGGCTTCAAGTGTGAGTGCGAAGCGGGCTACATGAGGGATCC
CAAAAATCACACCAGATGCAAGGCCAGCGAGGGACACGCCTCCCTGCTCC
TGGCCAGACGCCATGACATCCGCAAGATAGCACTCGACCACATGGAAATG
ACCTCCATTGTGAATAGTACAAAGGCAGCCACTGCCCTGGACTTTGTGTT
CCGCACGGGTATGATCTTCTGGAGCGATGTGACCACCCAGAGTATATATA
AAGCACCGATTGATGAGGGAAACGAAAAGACGGTAGTGTTGACTAAATCC
TCGGTGACCTCGGATGGCCTGGCTGTCGATTGGATCTATAACCATGTCTA
CTTTACGGACACCCACAAGTGCACCATCGAACTGACCAACTTCGAGGGCA
GCATGGGTAAGGTCCTGGTAAAGGACTCCCTGGACATTCCTCGTTCAATT
GCTTTGGATCCCATTGAGGGCTGGATGTACTGGTCCGACTGGGGCGCCTC
TCCGCGCATCGAAAGGGCGGGTATGGATGGCTCCCACCGCACCACCATCA
TCAGCTATGACGTCAAGTGGCCCAATGGTATCACCTTAGACCTGGTTAAG
AAACGCATCTACTGGGTAGATGGCAAGCTTAACGTTATCTCGTCGGCGAA
CTATGATGGCTCGCAAAGGAGCCAGGTGCTCTACTCCGGCGAATACCTGC
GACATCCCTTCTCGATCACCACCTTCGAGGACAATGTCTACTGGACCGAC
TGGGACAAACAGGCCGTCTTCAAGGCGAACAAGTTCACCGGGGAGGATGT
GGAGCCCGTTACAGCAATGCATATGCTCCAGCATCCAATGGTGGTGCACG
TGTACCATCCTTACCGCCAGCCGGATGGCGTGAATCACTGCCAGTCGGTG
AATGGCCACTGTTCTCATCTCTGCCTGCCAGCTCCCAGGATCAATGAGAG
GAGTCCTCGCATATCCTGCGCCTGTCCCACCGGTCTGAAGCTGATGGTCG
ATGGCCTCATGTGCGTCGAGGATCCACTTTATTTGCCTCCAGTCACGAGA
CCCCCGCGAGCCCGCAAAACGAAACCGAGGCCAAAATCCCCGAGGAGGCG
GCTGCCCACGGGTGTCCAGGTGGGACATGCTGACATTCGGATTGAAATTA
ACGATGATCTCCAGCTGAGCACCAGGCTACCCCTGTTGCCCACGACTTTC
GTTGCCGACCAGCGTCCAGTGAAAAACCATACTCAAATCGAAAAGACCAC
AACGCCCAGTGAGCAGCCGGATTCCGGCTTTATTGCACTGGTGGTCATAG
CCAGTCTTAGTGGATTCGCTGTCCTGCTATCGGTGCTCCTGCTCATTGGC
TACCGCTACTGCAGCAAGCGACGCATCAACTCGATGAACTTCGAGAACCC
CATCTACCGCAAGACCACCACCACAGAGGATCACTTCAGTTTGCGCAAAA
ATCTGCCGGCGCGGATCTACGACCACACCAGTGTCATGGATGAGGAGTAC
TCACCCGTCATAGGCATATCCTCGTATTAGAAGCTTTCTAGACCAT
BS25109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR1-RH | 3114 | CG31094-PH | 1..3114 | 17..3130 | 15570 | 100 | Plus |
| LpR1-RL | 2937 | CG31094-PL | 1..2608 | 17..2624 | 13040 | 100 | Plus |
| LpR1-RG | 2670 | CG31094-PG | 82..2670 | 542..3130 | 12945 | 100 | Plus |
| LpR1-RL | 2937 | CG31094-PL | 2609..2937 | 2802..3130 | 1645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR1-RH | 3975 | CG31094-RH | 229..3344 | 16..3131 | 15580 | 100 | Plus |
| LpR1-RL | 3798 | CG31094-RL | 229..2837 | 16..2624 | 13045 | 100 | Plus |
| LpR1-RG | 3546 | CG31094-RG | 326..2915 | 542..3131 | 12950 | 100 | Plus |
| LpR1-RL | 3798 | CG31094-RL | 2838..3167 | 2802..3131 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25744980..25746393 | 2425..1012 | 7070 | 100 | Minus |
| 3R | 32079331 | 3R | 25706816..25707928 | 2425..1313 | 3015 | 84.7 | Minus |
| 3R | 32079331 | 3R | 25758791..25759177 | 402..16 | 1935 | 100 | Minus |
| 3R | 32079331 | 3R | 25747007..25747233 | 1012..786 | 1135 | 100 | Minus |
| 3R | 32079331 | 3R | 25744684..25744883 | 2624..2425 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 25744366..25744542 | 2801..2625 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 25742154..25742316 | 3097..2935 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 25754345..25754487 | 542..400 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 25706287..25706479 | 2624..2432 | 680 | 90.2 | Minus |
| 3R | 32079331 | 3R | 25742392..25742526 | 2935..2801 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 25748103..25748225 | 785..663 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 25749269..25749391 | 663..541 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 25709411..25709513 | 892..790 | 260 | 83.5 | Minus |
| 3R | 32079331 | 3R | 25722419..25722536 | 539..422 | 245 | 80.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:03:06 has no hits.
BS25109.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 17:43:37 Download gff for
BS25109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RH | 230..3343 | 17..3130 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:21 Download gff for
BS25109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RH | 230..3343 | 17..3130 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:13 Download gff for
BS25109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RH | 230..3343 | 17..3130 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:13 Download gff for
BS25109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25744684..25744882 | 2426..2624 | 100 | <- | Minus |
| 3R | 25741980..25742012 | 3098..3130 | 100 | <- | Minus |
| 3R | 25742154..25742315 | 2936..3097 | 100 | <- | Minus |
| 3R | 25742392..25742525 | 2802..2935 | 100 | <- | Minus |
| 3R | 25744366..25744542 | 2625..2801 | 100 | <- | Minus |
| 3R | 25744980..25746392 | 1013..2425 | 100 | <- | Minus |
| 3R | 25747007..25747233 | 786..1012 | 100 | <- | Minus |
| 3R | 25748103..25748225 | 663..785 | 100 | <- | Minus |
| 3R | 25749270..25749389 | 543..662 | 100 | <- | Minus |
| 3R | 25754345..25754485 | 402..542 | 100 | <- | Minus |
| 3R | 25758792..25759176 | 17..401 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:21 Download gff for
BS25109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21584514..21584898 | 17..401 | 100 | | Minus |
| arm_3R | 21567702..21567734 | 3098..3130 | 100 | <- | Minus |
| arm_3R | 21567876..21568037 | 2936..3097 | 100 | <- | Minus |
| arm_3R | 21568114..21568247 | 2802..2935 | 100 | <- | Minus |
| arm_3R | 21570088..21570264 | 2625..2801 | 100 | <- | Minus |
| arm_3R | 21570406..21570604 | 2426..2624 | 100 | <- | Minus |
| arm_3R | 21570702..21572114 | 1013..2425 | 100 | <- | Minus |
| arm_3R | 21572729..21572955 | 786..1012 | 100 | <- | Minus |
| arm_3R | 21573825..21573947 | 663..785 | 100 | <- | Minus |
| arm_3R | 21574992..21575111 | 543..662 | 100 | <- | Minus |
| arm_3R | 21580067..21580207 | 402..542 | 100 | <- | Minus |
BS25109.pep Sequence
Translation from 16 to 3129
> BS25109.pep
MAIESRSTSTASETTKTAIKSTTSSKSPVTFGNLGEKRRAEQLFRCACAN
FNLLLLTLMLGFGKCCTATPTPLNTPSTNTPTSAVSPHNPQTLDESGSLS
KVIDGKAFINMGFKFLNVSGKIGTPLGIGQSLEAKCDEKQFQCHSGDCIP
IRFVCDGDADCKDHSDEQIKECKFIEATCSSDQFRCGNGNCIPNKWRCDQ
ESDCADGSDEANELCRARTCSPDEYACKSGEGQCVPLAWMCDQSKDCSDG
SDEHNCNQTCRADEFTCGNGRCIQKRWKCDHDDDCGDGSDEKECPVVPCD
SVAEHTCTNGACIAKRWVCDGDPDCSDGSDERSCANVTKTTTPCLSHEYQ
CKDRITCLHHSWLCDGDRDCPDGDDEHTANCKNVTCRADQFQCGDRSCIP
GHLTCNGDKDCADGSDERDCGLSLSLGINQGGCNATSEFDCGGGQCVPLS
KVCDKRKDCPDGEDEPAGKCGINECASKNGGCMHQCIDLKVGHHCECHEG
YKLSPDKRNCQDINECEVPGKCSQICVNEIGGFKCECEAGYMRDPKNHTR
CKASEGHASLLLARRHDIRKIALDHMEMTSIVNSTKAATALDFVFRTGMI
FWSDVTTQSIYKAPIDEGNEKTVVLTKSSVTSDGLAVDWIYNHVYFTDTH
KCTIELTNFEGSMGKVLVKDSLDIPRSIALDPIEGWMYWSDWGASPRIER
AGMDGSHRTTIISYDVKWPNGITLDLVKKRIYWVDGKLNVISSANYDGSQ
RSQVLYSGEYLRHPFSITTFEDNVYWTDWDKQAVFKANKFTGEDVEPVTA
MHMLQHPMVVHVYHPYRQPDGVNHCQSVNGHCSHLCLPAPRINERSPRIS
CACPTGLKLMVDGLMCVEDPLYLPPVTRPPRARKTKPRPKSPRRRLPTGV
QVGHADIRIEINDDLQLSTRLPLLPTTFVADQRPVKNHTQIEKTTTPSEQ
PDSGFIALVVIASLSGFAVLLSVLLLIGYRYCSKRRINSMNFENPIYRKT
TTTEDHFSLRKNLPARIYDHTSVMDEEYSPVIGISSY*
BS25109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR1-PH | 1037 | CG31094-PH | 1..1037 | 1..1037 | 5743 | 100 | Plus |
| LpR1-PK | 1076 | CG31094-PK | 1..1076 | 1..1037 | 5693 | 96.4 | Plus |
| LpR1-PL | 978 | CG31094-PL | 1..978 | 1..1037 | 5205 | 92.3 | Plus |
| LpR1-PJ | 996 | CG31094-PJ | 1..996 | 1..1037 | 5188 | 91.7 | Plus |
| LpR1-PQ | 976 | CG31094-PQ | 1..976 | 1..1037 | 5055 | 90 | Plus |
