BS25112.complete Sequence
1130 bp assembled on 2011-06-28
GenBank Submission: KX804568
> BS25112.complete
GAAGTTATCAGTCGACATGAGATTTAACTGGCTGAGCGAGTACGTGGCCA
GCATATCAAGCAGCATTGCATCGACATCCCCGTGGCGCCAACTGCAGCAG
CAGGTGCAGCAGCTCGTCCCCAATCCGCAGGCCATCTACTGCCGTATCAG
GTCATCATCCGCCGAAGCACTGGAGCACGTACTGATCGCCTGTGCGGTGT
ACTTGCTAGTATGCCTGGGCCTCTACAAGCTCACCTTCTGGCTCTCGGGA
GCCGGATCGGGATCGGGACTGGACGCCCACCACAACGGCAACGACACCAG
CAATGCCGGGTCGGGCGAGGGGGCAGAGCTGAACCCAAGTTCGGATGGCA
ATCGGAGTCCTGGCGGCCTGAAGCAGGCCCTTCAGTCCGGAATACGGCTG
CGTAGCGTCCGGCTGCCCAAAACGGCGTGCATGGAGCGCGTCCTGCTGAT
CACCGCCCATCCGGATGACGAGTGCATGTTCTTCGGACCGCTGATCTACT
CGCTGACGCAGCGCCAAGGCTGCCAGGTGTATATACTCTGCTTGTCCAAC
GGCAACTTCGAGCACAAGGCGAAGGTTAGGCGTCAGGAACTGTGGCGTTC
TTGCTCCAAACTGGGCATTCCCGAGTCCAATATCGTGCTGATGAATGCCA
CCAACCTGCCGGACGATCCCTACGTTGACTGGCGCCCAGATGCGGTGGCC
AGCTTGATACTGCACACGATCGAAAGCCTCGACATCCAGGCGATATTCAC
TTTTGATCGGGATGGCGTCAGCTCGCATCCGAACCATTGTGCCGTGTATT
ACGCGGCCGCCTCGCTCTGTTTGGCCAACCTTTTGCCCAAAGATTGTAAA
TTCTACACCTTGGACTCGATCAATGTGGTCAGAAAATATCTATCCATCTT
GGACCTGCTGTGCACGTGCTTTATGTCCACGCACTGGTGCATACTGAATT
GGAAGGAAGCTGCGATTGTGAGGAGTGCGATGATGGAGCATCAGTCGCAG
ATGCGATGGTTTCGCTGGCTCTACATTTACTTTTCGCGCTACATGTTTAT
CAATTCGATGCGTCAGATAAATCTCTCGGATGTGGAGTTGGAAATGCAGA
TACATGACAACTAAAAGCTTTCTAGACCAT
BS25112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4433-RD | 1098 | CG4433-PD | 1..1098 | 17..1114 | 5430 | 99.6 | Plus |
| CG4433-RC | 1098 | CG4433-PC | 1..1098 | 17..1114 | 5430 | 99.6 | Plus |
| CG4433-RB | 1098 | CG4433-PB | 1..1098 | 17..1114 | 5430 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4433-RD | 2271 | CG4433-RD | 457..1554 | 17..1114 | 5430 | 99.6 | Plus |
| CG4433-RC | 1958 | CG4433-RC | 457..1554 | 17..1114 | 5430 | 99.6 | Plus |
| CG4433-RB | 1958 | CG4433-RB | 457..1554 | 17..1114 | 5430 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20020347..20020882 | 552..17 | 2665 | 99.8 | Minus |
| 3R | 32079331 | 3R | 20019465..20019756 | 842..551 | 1445 | 99.7 | Minus |
| 3R | 32079331 | 3R | 20018986..20019168 | 1114..932 | 885 | 98.9 | Minus |
| 3R | 32079331 | 3R | 20019223..20019320 | 938..841 | 475 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:22:47 has no hits.
BS25112.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:49:57 Download gff for
BS25112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4433-RB | 435..1530 | 17..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:25 Download gff for
BS25112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4433-RB | 435..1530 | 17..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:38 Download gff for
BS25112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4433-RB | 457..1552 | 17..1112 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:38 Download gff for
BS25112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20018988..20019163 | 937..1112 | 99 | <- | Minus |
| 3R | 20019225..20019318 | 843..936 | 98 | <- | Minus |
| 3R | 20019465..20019755 | 552..842 | 99 | <- | Minus |
| 3R | 20020348..20020882 | 17..551 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:25 Download gff for
BS25112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15844710..15844885 | 937..1112 | 99 | <- | Minus |
| arm_3R | 15844947..15845040 | 843..936 | 98 | <- | Minus |
| arm_3R | 15845187..15845477 | 552..842 | 99 | <- | Minus |
| arm_3R | 15846070..15846604 | 17..551 | 99 | | Minus |
BS25112.pep Sequence
Translation from 16 to 1113
> BS25112.pep
MRFNWLSEYVASISSSIASTSPWRQLQQQVQQLVPNPQAIYCRIRSSSAE
ALEHVLIACAVYLLVCLGLYKLTFWLSGAGSGSGLDAHHNGNDTSNAGSG
EGAELNPSSDGNRSPGGLKQALQSGIRLRSVRLPKTACMERVLLITAHPD
DECMFFGPLIYSLTQRQGCQVYILCLSNGNFEHKAKVRRQELWRSCSKLG
IPESNIVLMNATNLPDDPYVDWRPDAVASLILHTIESLDIQAIFTFDRDG
VSSHPNHCAVYYAAASLCLANLLPKDCKFYTLDSINVVRKYLSILDLLCT
CFMSTHWCILNWKEAAIVRSAMMEHQSQMRWFRWLYIYFSRYMFINSMRQ
INLSDVELEMQIHDN*
BS25112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4433-PD | 365 | CG4433-PD | 1..365 | 1..365 | 1940 | 100 | Plus |
| CG4433-PB | 365 | CG4433-PB | 1..365 | 1..365 | 1940 | 100 | Plus |
| CG4433-PC | 365 | CG4433-PC | 1..365 | 1..365 | 1926 | 99.7 | Plus |
