BS25113.complete Sequence
1136 bp assembled on 2011-06-27
GenBank Submission: KX803418
> BS25113.complete
GAAGTTATCAGTCGACATGTTCCCGCAACGCAGCTCGGAGCTGTACCGCA
CTCCGGTGACCCACCAGCCTCCGCCGGCACTGGAGCTGGCCGGGAATCTG
GAGTACCCGAACCTCAACATTGCGGACCTAAACGCGCGATTGGAAAACCT
TTCGCCGCGACTGCACGACTGCTGGGACAGCATCGCTATCAATGATCACA
ACCACCTGGCCCTGGCCACAAACCGACGCGAAGGACGCCAATGGTGGGGC
ATGTTGTTCGGCTACGGACGCGACCAGATGCACCACATGAGCGTGGACTC
GGCGAACTTCAAGCTGCAGGCGGAGCACACGGTGAACATTGTGCGCTACG
CTGAGGATGATTTCCTACTGGTGGCCCTTGGGGATACCCGACTCCAGGCC
TGGTCCACATACTCCAAGGTGCGAGATTCTCAGTCGCCATACTGCCTCTT
CCTCGTGGGCGAGTCCAGTGCGCATCCCACACCCATCAGCCAACTGAGCG
TCTTCAAGGCGGATCCCCGCACTGCCGTTTCGGGCTCAGCGGACAGTACC
CTCAATGTCTGGGATCTCTCGGGCGCCGATATGGTGAGCACCTACAGATC
GCGCTCCTCGCATACCGACAAGTTGACTGGCCTGGCCACACCCGCAGCTT
CAGTCGATAAATTTGTGACCTGTGATCGTGGCGGCTGTGCCCGCCTTTGG
GATGTCCGGGCAGCGGCTCCATCTTCCACGTGCCTCTATGCGGATGCCAG
CCACGTGCTGAGCTTCACCAGTGCCGCCTGGGCAGCTGCCTCGGAGCTGC
AGGGTGACAATCACATCTATCTCGGGGACTACGACGGCAAAGTTCATACT
CTGGACATTCGAGTGCCACGAAAACTGGCGGAAACCAGGGAATACTTCGA
CAAGGGCCATGTCGCCCAGTTATTAATCAATGGGCCCCATCTGGCTGCGA
TGAGCAATTTGCCCGCCTCCGTGAAAGTGGCCAATGTGCAGGCGGGCCAT
GAGTTCATCTACACGCACCAGGACACCCATTCTCGCCTAACTGATGCCGT
TTGGACCGATGATAGCACCCTCATCACCATTGGACATGGCCGCAAAATGG
TGACGCACGCGATCAAATAAAAGCTTTCTAGACCAT
BS25113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vls-RA | 1104 | CG10728-PA | 1..1104 | 17..1120 | 5475 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vls-RA | 1310 | CG10728-RA | 82..1185 | 17..1120 | 5475 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20065057..20065598 | 558..17 | 2695 | 99.8 | Minus |
| 2L | 23513712 | 2L | 20064624..20065001 | 934..557 | 1875 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20064386..20064573 | 1120..933 | 925 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:46:08 has no hits.
BS25113.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:46 Download gff for
BS25113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 83..1179 | 22..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:02 Download gff for
BS25113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 87..1183 | 22..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:15 Download gff for
BS25113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vls-RA | 87..1183 | 22..1118 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:15 Download gff for
BS25113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20064388..20064572 | 934..1118 | 99 | <- | Minus |
| 2L | 20064625..20065001 | 557..933 | 99 | <- | Minus |
| 2L | 20065059..20065593 | 22..556 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:02 Download gff for
BS25113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20064388..20064572 | 934..1118 | 99 | <- | Minus |
| arm_2L | 20064625..20065001 | 557..933 | 99 | <- | Minus |
| arm_2L | 20065059..20065593 | 22..556 | 99 | | Minus |
BS25113.pep Sequence
Translation from 16 to 1119
> BS25113.pep
MFPQRSSELYRTPVTHQPPPALELAGNLEYPNLNIADLNARLENLSPRLH
DCWDSIAINDHNHLALATNRREGRQWWGMLFGYGRDQMHHMSVDSANFKL
QAEHTVNIVRYAEDDFLLVALGDTRLQAWSTYSKVRDSQSPYCLFLVGES
SAHPTPISQLSVFKADPRTAVSGSADSTLNVWDLSGADMVSTYRSRSSHT
DKLTGLATPAASVDKFVTCDRGGCARLWDVRAAAPSSTCLYADASHVLSF
TSAAWAAASELQGDNHIYLGDYDGKVHTLDIRVPRKLAETREYFDKGHVA
QLLINGPHLAAMSNLPASVKVANVQAGHEFIYTHQDTHSRLTDAVWTDDS
TLITIGHGRKMVTHAIK*
BS25113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vls-PA | 367 | CG10728-PA | 1..367 | 1..367 | 1944 | 100 | Plus |
