BS25115.complete Sequence
3632 bp assembled on 2011-07-19
GenBank Submission: KX804996
> BS25115.complete
GAAGTTATCAGTCGACATGAGGTTTTTTTCCGGCGTTTTCGTAATTTTAT
TAATTAAACTTTTCCAAAATGCCAACGCCGGCGAGGTGGAAGTCGTCGGC
TGCGGTGGATTCATCAAGAGCCACGCCGAGATTGACTTTTCCCGGGTGGA
GATCAAACTGCTGACCAAGCAGGGATCCCTGAAGGACAAGACGGACTGCT
CACCCTCTAACGGATATTACTTCCTGCCGATTTATGATAAGGGCGACTAC
CTGCTCAGCATTTCTCCGCCACCGGGTTGGAGCTTCGAGCCGGAACAGGT
GGAGTTGAACTTCGATGGCAAGACCGACGTTTGCAGCCAGGGTCGCGATG
TGAACTTTGTGTTCAAGGGCTTTGGCATCACCGGTCAGGTGGCTCTCGCC
GCCGGCGGCGGTGCCCGAGGCGTAGACGTGGAGCTGCGATCTGAACAGGG
CGAAGTCCGGCGCACAAAGAGCGATGCGAACGGAGTGTTCTCATTTACGC
CCATTATTCCCGGTAACTACGTGGTCAAGGCATCGCACGCAAGGTGGCAC
TTCTCCAAGGCGGAGCACAAGGTGGTTGTGGTTAGCGGCAACACCGAGCT
GCCGGCGAACTCTTTGGTAGTCTCAGGATTCGATGTGGTTGGTCGCTTTG
ATTCCAGCTCGCCGCTTCCTGGAAATCTGGGTGTGGCTCTTTACAAGAAG
AAAGGACAATCTTTAGTGCCAAAATGTGAGACATCCTCCCCAGCGCCGCC
TAATAGTGTTAATAGCGCATACGAATCCGCATCCTCCTGCTTCTCCCAGT
TGGACAAATCGGGAGAGTATATTTTCAAGAACGTGCCATCTGGAAAGTAC
CTGTTGCAAGCTATCAACCTAGATTCCAAGTTGAAGCTGCACTTGAGTCC
TGAGCTGTTGGAACTAGAAGTGGGCAAGGATACGCTGCAAATCAAGGACG
AATTTAAGATCACAGGCTTCACCGTTTCTGGTCGAGTTCTGACCTCCGCC
GGAGGGGAACCGCTAAAGTCAGCTGTTATTAAAGTTAATGGAAAGAAGGT
GGCCGAGACTGATGCCCAGGGCTCATATACGTTGGAAAACTTAAAGGCAG
GCACAGTCAACATCGAAGTGGAGTCCTCCCAGCTGCAGTTTTCTCCCCTG
CAAGTCAAGGCTCAGATCAACACAGCTTCCCTGCCCACCATTGTGCCATC
TGCTTATGAGGTGTGCGGAAAAGTAGTGTCGCCGAAATCACATAATGTGG
GACTTACCAAGATCGGCTCCACCTTCCACTCGTCGGCTTCCACAAACGCG
GAGACCGGAAACTGGTGCGCCTTTCTTCCTGTTGGCAAATATACCATTGA
AGTGCTGACGACGGATGCTGACAAGGCCGCTGGAGTGCAGTTCTTCCCTG
TTCAGCAGCAGACGGAGGTTCGCGATGCACCCGTCAATGGCATAACCTTT
TCCCAGCTGCGCGCAAAGATTCGCGGCGAACTGCAGTGTCTGCCTGATGC
TACCGCCACCTGCACTTCCGCTGAGGTCACCCTGCAGGCCTTAGATGCCA
CCGGTCAGCCCACGGAGAACAAGTGGAAGGCCAGGGCACATCGTGGCAAA
TACGTTTTTAAGGATATGCTTCCCGGTCCCTATGAACTTACAATTCCCCA
GGGAAATCTCTGCTACGAATCGACCCGCGTGTTCCTGAACGTTGCTTCTG
CTGAAGAAGATGCTCCCCCATTTGTACACAAGGGCTACGAGGTGTCCATT
ATCTCTAGCCATCGGGCACTGATGAAATACACCCACGTCACTGGACCTTC
TGAGCCAAAGGCACCTACTGAATCGCTGAAGATTGCGTCAGGAGTGAATA
CCTTTTGCGTGAAGAAGTATGGTAGCTACGATTTTAAGCTAGAGGGCTGC
CACACGTATGATGAATCGTTACCCAGCAAATTCATTACACCAGAACCAGA
TCAGTTGCAAACACTAATCATTAATGCAGTGGCCCACAAGACTGGCGTTC
GAGTTCTGTCTACCGAACCCACTGCTGATTCCATTAAGCTTGTGCTCGAA
TCTGAATCGCTGGGTCAGGAGGTGATCACACCTGTTGCTGAGTCCCACAA
AGTAGATGGCAAGTTCGCCTACCGCTATGACACGTATTTGAAACCGGAAC
AGGTACTTCGTATTACACCAGTGAGCGATGTCCTACTGTTTGCGCCCCAG
CAACACGAAATTGTTGGCAGCAGCGATTGTGTAGATATTGCCTTCAACTT
TGTGGCTACCAGAGGATTGATTCTACGCGGAAAGGTTGTTCCTGCCATTA
AGGATGCAAAGATCACACTGTCTTTCCCTGATCAGCCTGAGTTGGAGAGC
CTGGAAGTACTCACGTCCGTCACCGGAGAATTTAAGTTTGGCCCAATTGA
AGAGTCTCTTGCTTTTGACCTTAAGGCCGAAAAGGAGTCGTACGTTTTCA
GCGACTACAACCGCCAGACAGCTTCGTTTAGTGCTCACAAACTCTGCGAG
ATTTCGGTGGTTGTCAAGGATGAGGCTGGTCAGACATTGGGCGGAGTCCT
CCTTTCGCTGAGCGGTGGGGAGAGCTATCGCAAGAACCTCGTCACCGGCG
ATAATGGAGCTATTAACTTCCACTCCCTTTCGCCATCGCAGTACTACCTG
CGACCCATGATGAAGGAGTACAAATTCGAGCCCAACTCAAAAATGATTGA
CATTAAGGATGGCGAGACTGTTTCTGTTACCCTTGTTGGCAAGCGTTTCG
CTTACTCGATCTTTGGCACAGTGAGCTCCCTAAACGGCGATCCCTTCGCC
GGCGTTAATGTTCAGGCCACAGCCGATAATTCGTGCCCCCAGCAGCCGGA
GGAGGCCACCAGCGAGGCGAATGGACAGTATCGCATCCGAGGTTTGCAAC
CTGGCTGTAGTTACTCCGTTCGCGTCGTTCCCGACAAGGAAATCGTAGAG
CGATCTATTCCTGCCCAGCACACGGTTAAGGTGGCCAACGAGGATGTGCG
TGACATAAATCTGGTGGCTATTAGCCCCTTGAAGATTGTAGACATCACTG
CTAGGGTGACGGCCACACTCAATGAACACTACAAGACGCTGCGCATTGTG
ATGTACCGCAAAGGAAACTCGGATTCTCCTGTGTTCTCGCAACGTGTGGG
CACCCCGGTGAATCCTAAAGCAAGACTGAACCCTGGTATCACCGTCTTCT
TCCCTCGCATTCCTCTGGACGGCAAGAGCTACGTGGTAGAACTGCAGTCC
ACCCTCTCCGATAAAACATATACCTACAAGCTGCCATCGACTACGTTTGT
GGCTGACAGGGGTTCCGTGTTCGTTGAGTTGGAGTTCAAGCCGGAGGTGC
GCGCCGCCGAAGCGGATCTCAACCAGAATTCGATTTCGGCTCTGGTGCTC
ATCGCCTTGGTGGCCATTGCCTTCTTTAAGCAGGATCTGGCCACCAGTTT
CCTCAGCTTCGTGTGGAGCAAGCTTAACGATGTCGCCGCCGATCTCGCCC
AGCGACAGAAAAGCAAGACACAGGTGCGCAAGAACGAGCCAATCAACCAG
CGCGAGATTGAACAGATGGCCGACCAGATAAATGCCATCAAGAAGAAAAA
GACCAAGAAGATTTAGAAGCTTTCTAGACCAT
BS25115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1371-RA | 3600 | CG1371-PA | 1..3600 | 17..3616 | 17985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1371-RA | 3870 | CG1371-RA | 34..3640 | 10..3616 | 17990 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10072154..10073119 | 2736..1771 | 4815 | 99.9 | Minus |
| 2R | 25286936 | 2R | 10073758..10074645 | 1594..707 | 4440 | 100 | Minus |
| 2R | 25286936 | 2R | 10071211..10072090 | 3616..2737 | 4400 | 100 | Minus |
| 2R | 25286936 | 2R | 10074796..10075342 | 706..160 | 2735 | 100 | Minus |
| 2R | 25286936 | 2R | 10073181..10073359 | 1771..1593 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 10075462..10075612 | 160..10 | 725 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:01:12 has no hits.
BS25115.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 10:53:32 Download gff for
BS25115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1371-RA | 38..3637 | 17..3616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:03 Download gff for
BS25115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1371-RA | 41..3640 | 17..3616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:48 Download gff for
BS25115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1371-RA | 41..3640 | 17..3616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:48 Download gff for
BS25115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10073181..10073359 | 1593..1771 | 100 | <- | Minus |
| 2R | 10071211..10072090 | 2737..3616 | 100 | <- | Minus |
| 2R | 10072154..10073118 | 1772..2736 | 99 | <- | Minus |
| 2R | 10073760..10074645 | 707..1592 | 100 | <- | Minus |
| 2R | 10074796..10075342 | 160..706 | 100 | <- | Minus |
| 2R | 10075463..10075605 | 17..159 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:03 Download gff for
BS25115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5958716..5959595 | 2737..3616 | 100 | <- | Minus |
| arm_2R | 5959659..5960623 | 1772..2736 | 99 | <- | Minus |
| arm_2R | 5960686..5960864 | 1593..1771 | 100 | <- | Minus |
| arm_2R | 5961265..5962150 | 707..1592 | 100 | <- | Minus |
| arm_2R | 5962301..5962847 | 160..706 | 100 | <- | Minus |
| arm_2R | 5962968..5963110 | 17..159 | 100 | | Minus |
BS25115.pep Sequence
Translation from 16 to 3615
> BS25115.pep
MRFFSGVFVILLIKLFQNANAGEVEVVGCGGFIKSHAEIDFSRVEIKLLT
KQGSLKDKTDCSPSNGYYFLPIYDKGDYLLSISPPPGWSFEPEQVELNFD
GKTDVCSQGRDVNFVFKGFGITGQVALAAGGGARGVDVELRSEQGEVRRT
KSDANGVFSFTPIIPGNYVVKASHARWHFSKAEHKVVVVSGNTELPANSL
VVSGFDVVGRFDSSSPLPGNLGVALYKKKGQSLVPKCETSSPAPPNSVNS
AYESASSCFSQLDKSGEYIFKNVPSGKYLLQAINLDSKLKLHLSPELLEL
EVGKDTLQIKDEFKITGFTVSGRVLTSAGGEPLKSAVIKVNGKKVAETDA
QGSYTLENLKAGTVNIEVESSQLQFSPLQVKAQINTASLPTIVPSAYEVC
GKVVSPKSHNVGLTKIGSTFHSSASTNAETGNWCAFLPVGKYTIEVLTTD
ADKAAGVQFFPVQQQTEVRDAPVNGITFSQLRAKIRGELQCLPDATATCT
SAEVTLQALDATGQPTENKWKARAHRGKYVFKDMLPGPYELTIPQGNLCY
ESTRVFLNVASAEEDAPPFVHKGYEVSIISSHRALMKYTHVTGPSEPKAP
TESLKIASGVNTFCVKKYGSYDFKLEGCHTYDESLPSKFITPEPDQLQTL
IINAVAHKTGVRVLSTEPTADSIKLVLESESLGQEVITPVAESHKVDGKF
AYRYDTYLKPEQVLRITPVSDVLLFAPQQHEIVGSSDCVDIAFNFVATRG
LILRGKVVPAIKDAKITLSFPDQPELESLEVLTSVTGEFKFGPIEESLAF
DLKAEKESYVFSDYNRQTASFSAHKLCEISVVVKDEAGQTLGGVLLSLSG
GESYRKNLVTGDNGAINFHSLSPSQYYLRPMMKEYKFEPNSKMIDIKDGE
TVSVTLVGKRFAYSIFGTVSSLNGDPFAGVNVQATADNSCPQQPEEATSE
ANGQYRIRGLQPGCSYSVRVVPDKEIVERSIPAQHTVKVANEDVRDINLV
AISPLKIVDITARVTATLNEHYKTLRIVMYRKGNSDSPVFSQRVGTPVNP
KARLNPGITVFFPRIPLDGKSYVVELQSTLSDKTYTYKLPSTTFVADRGS
VFVELEFKPEVRAAEADLNQNSISALVLIALVAIAFFKQDLATSFLSFVW
SKLNDVAADLAQRQKSKTQVRKNEPINQREIEQMADQINAIKKKKTKKI*
BS25115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1371-PA | 1199 | CG1371-PA | 1..1199 | 1..1199 | 6126 | 100 | Plus |
