BS25116.complete Sequence
992 bp assembled on 2011-06-27
GenBank Submission: KX805976
> BS25116.complete
GAAGTTATCAGTCGACATGTCCCAGATGGGCGGCACATGCTTGTACGATG
AGCCCGAAATCATGGAGGAGTTCATCAGCTGTTATCAGTATTTCACCGCC
CTGTGGGACAGCAGCAGTCCCGATTATCTATCGAAACAGAAAAAGGAGCC
CGGCTATCAGGAGCTATTGAAGATACTGCGACGCGTTAATAGCAACTGTT
CGATTCAGGATGTTAAGCGAAAGATAAACTCGCTGCGTTGCTGCTATCGT
CGTGAATTCAAAAAGGTACAGGAATCGGTCAATGGCTACCAGACGCGTCT
CTGGTGGTTTCATCTGATGGATTTCCTCAAGCCGGTACTCAACATACAAT
CGCCGGCCAGGGTGAAATCCGAGAACGTGGACGATAGTCTCGACGAGACC
AGCATTCAGGATGTTGACATTATGTCTGATGCCTTTCCACACGAAGAGGA
TATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAACCGGAACCCG
AGCCTGATAACGATCCCGAATTGGATAACATGGATGATCATGTTGATGAT
TATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATGGCTATCAGCA
GCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCGCAGACTTCGG
ATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAGTAGCAATGAC
ACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGGAGACTTCGAA
TAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGAGACAGAAAGC
ATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAAACGGATGGCC
AGCCACTTCCGGCGTATGCGTCCGGATCAGCGACTTTTCGCCGAACGGAT
CATCAGCGAGGTGTTGGTCTATGGCCGAATGAATCGCCTTTCGTTCGAGA
CCCAATTTAGTATGGGTCATAAATAAAAGCTTTCTAGACCAT
BS25116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-RE | 960 | CG4004-PE | 1..960 | 17..976 | 4770 | 99.8 | Plus |
| CG4004-RD | 960 | CG4004-PD | 1..960 | 17..976 | 4770 | 99.8 | Plus |
| CG4004-RA | 960 | CG4004-PA | 1..960 | 17..976 | 4770 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-RE | 2237 | CG4004-RE | 346..1305 | 17..976 | 4770 | 99.8 | Plus |
| CG4004-RD | 1985 | CG4004-RD | 94..1053 | 17..976 | 4770 | 99.8 | Plus |
| CG4004-RA | 3403 | CG4004-RA | 94..1053 | 17..976 | 4770 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12746864..12747435 | 405..976 | 2830 | 99.7 | Plus |
| X | 23542271 | X | 12744557..12744950 | 17..410 | 1970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:46:29 has no hits.
BS25116.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:47 Download gff for
BS25116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RA | 92..1043 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:12 Download gff for
BS25116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RA | 94..1045 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:22 Download gff for
BS25116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RA | 94..1045 | 17..968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:22 Download gff for
BS25116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12744557..12744949 | 17..409 | 100 | -> | Plus |
| X | 12746869..12747427 | 410..968 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:12 Download gff for
BS25116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12638590..12638982 | 17..409 | 100 | -> | Plus |
| arm_X | 12640902..12641460 | 410..968 | 99 | | Plus |
BS25116.pep Sequence
Translation from 16 to 975
> BS25116.pep
MSQMGGTCLYDEPEIMEEFISCYQYFTALWDSSSPDYLSKQKKEPGYQEL
LKILRRVNSNCSIQDVKRKINSLRCCYRREFKKVQESVNGYQTRLWWFHL
MDFLKPVLNIQSPARVKSENVDDSLDETSIQDVDIMSDAFPHEEDMLRLD
AVGDGDVEPEPEPDNDPELDNMDDHVDDYRNNSSAGSIKNNGYQQHTVSS
HQQHNGESQTSDKSGRRIRNRRRRSSNDTDYVEAARKRRNVETSNRDRDW
HRERDRERDRKHESDSEYECELIGKRMASHFRRMRPDQRLFAERIISEVL
VYGRMNRLSFETQFSMGHK*
BS25116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-PE | 319 | CG4004-PE | 1..319 | 1..319 | 1702 | 100 | Plus |
| CG4004-PD | 319 | CG4004-PD | 1..319 | 1..319 | 1702 | 100 | Plus |
| CG4004-PA | 319 | CG4004-PA | 1..319 | 1..319 | 1702 | 100 | Plus |
| CG4004-PB | 339 | CG4004-PB | 4..339 | 29..319 | 1123 | 67.6 | Plus |
| CG4004-PC | 304 | CG4004-PC | 115..304 | 130..319 | 1003 | 98.9 | Plus |
