Clone BS25117 Report

Search the DGRC for BS25117

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:251
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL15-RA
Protein status:BS25117.pep: full length peptide match
Sequenced Size:893

Clone Sequence Records

BS25117.complete Sequence

893 bp assembled on 2011-06-27

GenBank Submission: KX805346

> BS25117.complete
GAAGTTATCAGTCGACATGGCACACCTGCGGGAGACCTCGGACAAGGCGC
TGAAGCTGTTGCGTACTTTACCGCGCGTTCAAATCGGCAATCTGCGACCA
AATCCAAACTCAAAACAGAATGACAAGCGCGGCAGGGCACAACACGGAGG
AGATAAGCACGGAGCGGGCAACAAGGGATCCGGTCAGCGGCAGAACTTCA
TGCGATTGGGCTATGAAACGGGCAATCAGCCCTTCTACTTGAGATTTCCC
TACGAGCCCTACTACAAGGGACACCACCTAAAGCGCCAGTATCCGCCCAT
TTCGCTGCTCCAACTGCAAGTGCTCATCGACACGAACCGCATAGACATCA
GCCAGCCCATCGACATCAGCACGCTGTGTAACTCTGGCCTCCTGAAACTG
AAACCCGCTGAAATGGAGTACGGTTTCCAGCTGACGGACGATGGGCTGGA
CAATTTCCAGGCTAAGATCAACATTGAGGTGCAGCACGCCAGCGAGGCGG
TCATAGCGGCCATAGAGAAGAACGGCGGTGTAATCCGTACGGCCTATTAC
GATCCACGCAGCCTTCACATGCTGGCCAATCCGAAGAAGTGGTTCGAAAA
GGGAGTACCTATTCCTAGCCGCATGCTGCCGCCCCAGGATGCAGTGGACT
ACTATACGGATCCCAAGAATCGCGGCTACCTGGCCAATCCCGAGGCGATC
AGCCAGGACCGCCTAGTTCTGGCCCAGAAGTACGGCTATCAGCTGCCCAA
AATTGAGGAAGATTCCGCGTACGAGATGCTCACCACAGCGAAGGATCCAA
GGCAAGTATTCTACGGCCTGGAACCCGGCTGGCTGATCAACATAGTGGAC
AAAACGATCATTAAGCGCAAGCAATAAAAGCTTTCTAGACCAT

BS25117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL15-RA 861 CG5219-PA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL15-RA 1029 CG5219-RA 120..980 17..877 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20435159..20435914 877..122 3780 100 Minus
3L 28110227 3L 20435985..20436090 122..17 530 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:46:44 has no hits.

BS25117.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:47 Download gff for BS25117.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL15-RA 82..940 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:18 Download gff for BS25117.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL15-RA 120..978 17..875 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:28 Download gff for BS25117.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL15-RA 120..978 17..875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:28 Download gff for BS25117.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20435161..20435914 122..875 100 <- Minus
3L 20435986..20436090 17..121 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:18 Download gff for BS25117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20428261..20429014 122..875 100 <- Minus
arm_3L 20429086..20429190 17..121 100   Minus

BS25117.pep Sequence

Translation from 16 to 876

> BS25117.pep
MAHLRETSDKALKLLRTLPRVQIGNLRPNPNSKQNDKRGRAQHGGDKHGA
GNKGSGQRQNFMRLGYETGNQPFYLRFPYEPYYKGHHLKRQYPPISLLQL
QVLIDTNRIDISQPIDISTLCNSGLLKLKPAEMEYGFQLTDDGLDNFQAK
INIEVQHASEAVIAAIEKNGGVIRTAYYDPRSLHMLANPKKWFEKGVPIP
SRMLPPQDAVDYYTDPKNRGYLANPEAISQDRLVLAQKYGYQLPKIEEDS
AYEMLTTAKDPRQVFYGLEPGWLINIVDKTIIKRKQ*

BS25117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL15-PA 286 CG5219-PA 1..286 1..286 1514 100 Plus