BS25118.complete Sequence
734 bp assembled on 2011-06-27
GenBank Submission: KX802518
> BS25118.complete
GAAGTTATCAGTCGACATGAATTTACCAGCGAAAATGGACGTGGAAAAGG
ATAAGCTTCGCCAGATGCACTGCGAATTCAATCCCTTGTCGCGTTGCGAC
GGATCCGTGATGTACAGCCAGGGTGCTACAGGTCTCATAGGCGCAGTTCT
CGGCCCCATCGAGGTGAAGACCCAAAATCTGAGCATAGATGGCAGCTACT
TGGAGTGTAACTACCGACCAAAAGCGGGCCTGCCGCAGGTTACCGATCGG
ATTCGGGAGGCGGCCATTCGGGATGTGCTGGAACTGGCCCTCCTGTCGGA
GGCTCATCCGCGCTCCAAGATGTCCGTGCAGATCCAGGAGCTGGAAGATC
GTGGCAGTATTGATGCCTGCGCCGTAAATTGCGCCTGCCTAGCCATGCTC
ATCGGAGGCCTGCCTTTAAAGTATAGCTTTGCGGCTGTCCACGCCATCAT
CAACGAGCAGGGCGAGTATGTGCTAGATCCGGACCAAAGTGAAACCCTCC
ACCAGCGCGCCAGTTTTACATTCGCCTTTGATTCTGTGGAAGGAAACCTT
CTGTTGATCCAGACAAAGGGCTCTTTCAAAATAGCCCAGTTCAATGATAT
TGAGTGCCTATGCCTGGCTGCCAGTGCCGAGATCTTTCAGTTCTATCGCA
ACCAGGTTGCAAAGTATCATGGCAGGAGTGAGGCGACGGCTAAGAAGGAG
GACGTCAATGAGACGTGAAAGCTTTCTAGACCAT
BS25118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp46-RA | 702 | CG4043-PA | 1..702 | 17..718 | 3465 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp46-RA | 819 | CG4043-RA | 73..774 | 17..718 | 3465 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10413838..10414197 | 359..718 | 1770 | 99.4 | Plus |
| 3R | 32079331 | 3R | 10413543..10413779 | 122..358 | 1170 | 99.6 | Plus |
| 3R | 32079331 | 3R | 10413373..10413480 | 17..124 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:47:02 has no hits.
BS25118.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:48 Download gff for
BS25118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp46-RA | 73..773 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:23 Download gff for
BS25118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp46-RA | 73..773 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:35 Download gff for
BS25118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp46-RA | 73..773 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:35 Download gff for
BS25118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10413373..10413478 | 17..122 | 100 | -> | Plus |
| 3R | 10413544..10413779 | 123..358 | 99 | -> | Plus |
| 3R | 10413838..10414196 | 359..717 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:23 Download gff for
BS25118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6239095..6239200 | 17..122 | 100 | -> | Plus |
| arm_3R | 6239266..6239501 | 123..358 | 99 | -> | Plus |
| arm_3R | 6239560..6239918 | 359..717 | 99 | | Plus |
BS25118.pep Sequence
Translation from 16 to 717
> BS25118.pep
MNLPAKMDVEKDKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEV
KTQNLSIDGSYLECNYRPKAGLPQVTDRIREAAIRDVLELALLSEAHPRS
KMSVQIQELEDRGSIDACAVNCACLAMLIGGLPLKYSFAAVHAIINEQGE
YVLDPDQSETLHQRASFTFAFDSVEGNLLLIQTKGSFKIAQFNDIECLCL
AASAEIFQFYRNQVAKYHGRSEATAKKEDVNET*
BS25118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp46-PA | 233 | CG4043-PA | 1..233 | 1..233 | 1197 | 100 | Plus |
| Ski6-PB | 246 | CG15481-PB | 22..221 | 13..206 | 150 | 23.8 | Plus |
| Ski6-PA | 246 | CG15481-PA | 22..221 | 13..206 | 150 | 23.8 | Plus |
