BS25120.complete Sequence
998 bp assembled on 2011-06-27
GenBank Submission: KX806519
> BS25120.complete
GAAGTTATCAGTCGACATGTTGACCGAATTCGCTGGCAATCTATCGCATC
CGCTGGAGTTTGGTCATGTTCTGGAGGTCGTGGCCAAGACCATCGATGGA
GCAGCCAGGTTCCACATTAACCTCTGCACGGCCAAGAGCACGGTCGATCC
GAACGCAGATATTGGGCTACGCTTCTCATGCTATTTTCGGAACGATGTGA
TCGTTCGAAATTCCCGGATAAACGGCGCCTGGGGCGAGGAGGAGTCCCAT
GTCATGGACCCCAACACCCTGCCCAATCCCATCGTCAGTGGCGAGTTCTT
TTTGGTCTACATTCTTTGTTGCGAGGACAGCTTTGCCATCTCGATAAATA
GCCGAGAGTTCTGCAGATTCCGCTACCGCATGCCGTTGGGAACGATTCGT
GCTCTGGAGATCCGTGATCAGATCCAAGTCATTAAACAGGTGGATCATCG
TACTGTGTTTCCAAATCCGTGGCCAGCCGTTCACGCCTCGGACTACTTTA
AGGCGTTCAGTAACGATCAGCCAATTTTGTTTAGTCCGGGCCATGTGATT
GTCCTTACAGCTCGGTGTTTCGAGAATAAAAAGGGACAGTTCATAATCAA
GTTCATGGACTCGGATACCAAGCGCGAGGAGCTACACTTCAGTGTGCGTT
TCGATGAGAAGGCAGTAGTGCGCAATTCCATGAACAAAAATTTTGAATTC
GGAAGCGAGGAGCGCCATGGAGGTTTCCCCTTCGTCTTTAACCAGCAATT
CAAGCTGGCGCTTGCGTTTACGGAACGCGAGGTTTTGACTGCCGTGGACG
GTTATAACTTCTTTAGCTACACCTGGCGCACACCCAATGCCATGATGAAT
CTAGTGGGTTTCAAGGTGACAAGCATAAATGGCCTGGTAGTGCAGATAAC
TGGTGTGGATCACCTGCAGACGGGGGATCCTACGTGCGCTGGCTTCGAAA
AATATTCCCGCCATGATTACGAATGTGTTTAGAAGCTTTCTAGACCAT
BS25120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5335-RA | 966 | CG5335-PA | 1..966 | 17..982 | 4725 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5335-RA | 1273 | CG5335-RA | 251..1217 | 16..982 | 4730 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18621999..18622588 | 107..696 | 2935 | 99.8 | Plus |
| 2R | 25286936 | 2R | 18622645..18622930 | 697..982 | 1340 | 97.9 | Plus |
| 2R | 25286936 | 2R | 18621791..18621885 | 16..110 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:47:15 has no hits.
BS25120.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:49 Download gff for
BS25120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5335-RA | 253..1213 | 22..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:29 Download gff for
BS25120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5335-RA | 257..1217 | 22..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:41 Download gff for
BS25120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5335-RA | 257..1217 | 22..982 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:41 Download gff for
BS25120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18621797..18621883 | 22..108 | 100 | -> | Plus |
| 2R | 18622001..18622588 | 109..696 | 99 | -> | Plus |
| 2R | 18622645..18622930 | 697..982 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:29 Download gff for
BS25120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14509302..14509388 | 22..108 | 100 | -> | Plus |
| arm_2R | 14509506..14510093 | 109..696 | 99 | -> | Plus |
| arm_2R | 14510150..14510435 | 697..982 | 97 | | Plus |
BS25120.pep Sequence
Translation from 16 to 981
> BS25120.pep
MLTEFAGNLSHPLEFGHVLEVVAKTIDGAARFHINLCTAKSTVDPNADIG
LRFSCYFRNDVIVRNSRINGAWGEEESHVMDPNTLPNPIVSGEFFLVYIL
CCEDSFAISINSREFCRFRYRMPLGTIRALEIRDQIQVIKQVDHRTVFPN
PWPAVHASDYFKAFSNDQPILFSPGHVIVLTARCFENKKGQFIIKFMDSD
TKREELHFSVRFDEKAVVRNSMNKNFEFGSEERHGGFPFVFNQQFKLALA
FTEREVLTAVDGYNFFSYTWRTPNAMMNLVGFKVTSINGLVVQITGVDHL
QTGDPTCAGFEKYSRHDYECV*
BS25120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5335-PA | 321 | CG5335-PA | 1..321 | 1..321 | 1714 | 100 | Plus |
| CG13950-PA | 316 | CG13950-PA | 14..273 | 15..270 | 221 | 26.9 | Plus |
