Clone BS25124 Report

Search the DGRC for BS25124

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:251
Well:24
Vector:pDNR-Dual
Associated Gene/Transcriptfs(2)ltoPP43-RB
Protein status:BS25124.pep: gold
Sequenced Size:797

Clone Sequence Records

BS25124.complete Sequence

797 bp assembled on 2011-06-27

GenBank Submission: KX804900

> BS25124.complete
GAAGTTATCAGTCGACATGCCAGCGGTTGTGCGAATCAAGCGACGCATCG
ACGAGGAGCCTCAGACGGCATTTGTGCTAAACGGCAAGCGGCGGCGCCTC
CACAACGATGAGAACGCCCTGGAGGACGCGGGAGCGGTGGCGGGAGCGGT
GGCGGGAGCGGTGGCATCAGACAAAGACGAACTGACCACCGTGCTCAAGT
TTGCCGGCACGCTGGAAAAGCAGGACGACTGTGCCACTCGTAAATTCGCC
GCTGCCAGGCTCAACAAGGCCGCAGCCCGTGATCTGGTGCAACAGCAGCG
CTCCAATGATGCAGCCATTGCTAGTGCGCTGCGCAGAGATCGCCAGCGGC
AGGAGGCTCAGGAGAACTCAAGGGAGCAGCGTTTCCGGGTCGTAAACTGC
CTGCGCAGCACGCTCGAAAACAGTGCCGCAGAAGCGGAATGCCCGGAGAG
CCAGAGTCATGAGTCCAGCAGCCACATAACCATCGTGGACATTGAATCGC
AACAGCAACAGCACATGGGCACTGCAAGTGCAGCAGCTGAGGAGCAGCAG
CAGCAGGAGATAGCACCCAGCCAGGATCAGCAGCAGCCGGCCGATTCGGA
CGTGGGCTATGTCTACGATCTATATGTTCCCGAGAACGAGATGCAGGCGG
CATATGTGGACATGATGGACGACAACTACTTAAGGTTTGTCATTCAAGTT
GAGCCACAGAAAACGTTGAGCATTACCAATTACTATATGTAAAAGCTTTC
TAGACCTATTCGTGGGGCGCCTCAAAAGGGGGGGGAGGGTTAAAGAG

BS25124.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
fs(2)ltoPP43-RB 726 CG10528-PB 1..726 17..742 3630 100 Plus
fs(2)ltoPP43-RC 711 CG10528-PC 1..671 17..687 3355 100 Plus
fs(2)ltoPP43-RA 1104 CG10528-PA 1..668 17..684 3340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
fs(2)ltoPP43-RB 1870 CG10528-RB 106..831 17..742 3630 100 Plus
fs(2)ltoPP43-RC 1471 CG10528-RC 106..776 17..687 3355 100 Plus
fs(2)ltoPP43-RA 1338 CG10528-RA 106..773 17..684 3340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19794525..19795047 742..220 2615 100 Minus
2L 23513712 2L 19795539..19795746 224..17 1040 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:45:49 has no hits.

BS25124.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:45 Download gff for BS25124.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 104..829 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:54 Download gff for BS25124.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 106..831 17..742 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:09 Download gff for BS25124.complete
Subject Subject Range Query Range Percent Splice Strand
fs(2)ltoPP43-RB 106..831 17..742 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:09 Download gff for BS25124.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19794525..19795043 224..742 100 <- Minus
2L 19795540..19795746 17..223 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:54 Download gff for BS25124.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19794525..19795043 224..742 100 <- Minus
arm_2L 19795540..19795746 17..223 100   Minus

BS25124.pep Sequence

Translation from 16 to 741

> BS25124.pep
MPAVVRIKRRIDEEPQTAFVLNGKRRRLHNDENALEDAGAVAGAVAGAVA
SDKDELTTVLKFAGTLEKQDDCATRKFAAARLNKAAARDLVQQQRSNDAA
IASALRRDRQRQEAQENSREQRFRVVNCLRSTLENSAAEAECPESQSHES
SSHITIVDIESQQQQHMGTASAAAEEQQQQEIAPSQDQQQPADSDVGYVY
DLYVPENEMQAAYVDMMDDNYLRFVIQVEPQKTLSITNYYM*

BS25124.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
fs(2)ltoPP43-PB 241 CG10528-PB 1..241 1..241 1208 100 Plus
fs(2)ltoPP43-PC 236 CG10528-PC 1..223 1..223 1116 100 Plus
fs(2)ltoPP43-PA 367 CG10528-PA 1..225 1..225 1112 98.7 Plus