BS25127.complete Sequence
3461 bp assembled on 2011-07-19
GenBank Submission: KX800367
> BS25127.complete
GAAGTTATCAGTCGACATGGTGGAGCCCAAGTCCGGGACAGCTGCTTCTG
CCGCTGCTGCGAAAGCAAGCAACAACAATAACAACAACCACCCCCGTGGA
TCTGGGGACAGCGGCATCCGGAGTGGCAGCGGCATTTCCTGCAGCAACAC
GGACAACAGCTGCAGCCAGAGTCAGTCAGACGGACAGAATGAGCTGACGC
GCTACAGCAGCGAGGATGTGTCGGGCAACGAGTCCAGCGAGGCGCCCAAC
ATGACCGAGGTGGAACGCCAGGCGGAGCTTAACAGGCACAAGGAGGAGAT
GCAGAAGAAGCGGCGCAAGAAACGCATCAGCTCCTCCCTTCATTCCTCAA
CCTTTCAGGAGCTGTACAAGCTGACTGGCGAGATTCTTGGCGAGGGAGCC
TACGCATCGGTGCAAACTTGCGTTAACATCTACACCGATCTGGAGTATGC
CGTGAAGGTGATCGATAAGATACCGGGGCATGCGCGTGCACGTGTCTTTC
GCGAAGTGGAGACATTCCATCACTGCCAGGGCCATTTGGGCATCTTGCAA
CTGATTGAATTCTTTGAGGATGACGAGAAGTTCTACCTGGTATTCGAGAA
GATCAACGGTGGTCCATTGCTATCGCGCATACAGGAGCACATTTGCTTCT
CCGAGCATGAGGCCTCGCAGATAATCAAGGAGATCGCCTCCGGACTTGAT
TTTCTGCACAAGAAGGGCATTGCCCATCGTGATCTCAAGCCGGAGAATAT
TCTGTGTGTCAAGACGGATTCGCTGTGCCCAATCAAGATTTGCGACTTTG
ATTTGGGTTCGGGGATTAAGTTCACTACGGACATCTCGTCGCCAGCAGCC
ACTCCTCAGTTATTGACACCAGTTGGCAGTGCCGAGTTTATGGCTCCGGA
AGTGGTCGATTTGTTTGTGGGTGAGGCACACTATTACGATAAGAGGTGCG
ATTTGTGGTCCCTGGGAGTCATTGCTTACATCCTGCTCTGCGGTTATCCG
CCATTTTCGGGCAACTGTGGTGAGGATTGCGGCTGGAATCGCGGTGAAAA
CTGCCGCACGTGCCAGGAACTGCTTTTCGAGTCCATTCAAGAAGGACACT
TTTCTTTCCCGGAGGCCGAGTGGCACGATGTCAGCGATGAGGCCAAGGAC
CTAATTTCTAATCTGCTTGTCAAGAAGGCATCGAACCGCCTCAGTGCCGA
GGCAGTGTTGAATCACCCATGGATTCGTATGTGCGAGCAGGAGCCACCGG
CAAGCAAGCATGGCAGGCGCCACAAGGCTTTGCAAACGCCCAGTAACATC
CGACGCAATCACCAGTCGGCAAGGGAAATCTCGCAGTTTGCCGAATCTGC
TATGGCCGTCAAGCGTGTGGTCCTACAGCATTTCTCGATGCGCTACGATT
ACATGAAAGAGCGTCCCAACATCTACCAGCCATCGCAGGCCTACATGGAT
GCCTATAGCGATGAAAACTACAATCCCAAGCCGCCGGGTCATTACACTCG
CAATCGCTCGCAGCGCAATCCCGCTTCCTCCTTGTGCGGCTACGGAGGGC
GTATGTCCTCGATGCACGGCCAGCGGGCCAATAGCCGTCGGTCTTCCCGA
AATGCGTCTCGCAATGCATCTGCAATTTATCCGAATAGCGGGGGCTTCAA
GACATTGAACGTCCACGAGGAAGATGACGACGATGAAGGTCTGGAGGCTT
TTGGCCACATCGATGATGATGATGAGTGGAGCAGGTCTAGGAGGGAATAT
CAGCAGCAGTGTGAGACGCTGGGCGAGGATCGCTTTAGGCGTCAGAGCGG
AAGCGAAGGCGACGAAGTGGAAGATGATGAGGATGGAGAGAATGAGGACT
ATCAGCACTATAAGCATTACTGGCGCGAATTAGACGAGGAAGAGGGCGAC
GACTATCTGTATGAGCAGCAGCAGCGCGTCGATGATAAATTCGGGGAAGA
GGAGTTCGAGGACGAACCAAAGGAGGAAACTCAAGCTGACAATCTAAAGC
TATCGAAAGCTTACGTGGAGCAAGTTGGCGAGACCAATGTGGAGAAATCG
AAGCCACAGGACGATAACGGTGGGTATATAAGGGAGGACCTTATTATGGA
TAATATGGATATGAAGAAAAACACTCAGCAAAGCGAATTTGCTAAGCTCA
CCATAATGCGCAACGATGCGCAGACGGAGGAGAATAAGATAATGCAGCAG
CAGGATGAGGAGAAGAAAGAGGAAAAACAGCAGGATGATGTTGATGGGGC
TAAGAAGCAAGGACCATCAAGTGATATTAGTGCTACTACCATCACCGATA
ATAACAAGCTGCAAACACCAGTTATGACTACAACACACATTAACAACTGG
CAAACTGGCGATGCAATTGAAGATGATGATGTTAAACTATTGGATAGTAT
TAGTGATTTAAATGAAAAGCTACCTGAAATTTATGAGACTGCAAATATTG
TTGTCAACTCAGCGGCAGTGCCAGCAGCATCGACACCAGCAGCATCAGCA
ACACGCCCACCAACCGATAACCCAGAGGAAGATGATTCGAACGTGACCAA
ACCGACGACTACTGCTGAGGGGACAACAATGCAAACGACTTTTGGCATGT
CAGCGGAAGAGGAGAAGCCTGTAGCCCTATCCCACACCGCGGGTCACCAC
AGCAAGACCGGCCGCACTGTTAACTTTGCCCCCGATGCATATCAGAACGA
CGAGGATGCCGATATCGACGAGGACGACGACTACGATGACGAGGAGAATC
TGCATGAGCACAGCAAGCAACAGCTGCCGTCCAATGCCTACACTCGTAAG
CAGCGACAGCAGCACCAGCGGTACATTGTGCCACGCTACCAGCTTGCGGA
TCAAGTTCCTCAGAGGCAGCACACCGAAAACTGGCGTTATCGCACCCATC
ACTCGCAGGAACAGCAGCCGACAGCGGACTATCGCAAGTATCGCCCGCCG
TTTAGCACCGGAGGCGGCGGTGGCCACCATGGCAACCAGCAGCGCAATTA
CCTGGGGAGCTTCTCGCACAGCGGCGGTGCCGCTGGTTACAAGATTGCTC
CAATGCCGCCACCAATGCAGCCGCCTCCGCGGCACAACAGCGCCGGAAGC
AGTGGCAGTGGTAGCGGCAGCGGCGGATCTCCGCCATCTGACGAGCAGTC
GGCCATACGCAACTGGCGTCAGGATTGTGTTTACGCCCGCAGTTGCGGGA
TGAACCAGGGACCGGAACAGCAGCGGCACAACCGTTCGTCGGGTCAGCGT
GTCCAGCAGCAGCCGCGGATTGGCAGTGGACGCTTCGCCCACCTGCAGGC
GGCCCAATTGATGGACGAGTTGCCTGATATGAGGATCGGCCTTTCGCCGC
CCAGCGAGAGTGTACTGCTCCAAAGGCGCCTGCGCCAGCAGCAGCGGGCC
AACGATCTGTCTGAGTACTGCGAGCCGGCCACCGCCAGTGGTTAAAAGCT
TTCTAGACCAT
BS25127.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lk6-RA | 3429 | CG17342-PA | 1..3429 | 17..3445 | 17145 | 100 | Plus |
| Lk6-RB | 3273 | CG17342-PB | 6..3273 | 178..3445 | 16340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lk6-RA | 6281 | CG17342-RA | 810..4240 | 15..3445 | 17155 | 100 | Plus |
| Lk6-RB | 4379 | CG17342-RB | 525..3792 | 178..3445 | 16340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11752972..11755112 | 3445..1305 | 10705 | 100 | Minus |
| 3R | 32079331 | 3R | 11755733..11756247 | 873..359 | 2575 | 100 | Minus |
| 3R | 32079331 | 3R | 11755448..11755671 | 1095..872 | 1120 | 100 | Minus |
| 3R | 32079331 | 3R | 11755177..11755389 | 1305..1093 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 11756313..11756495 | 359..177 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 11763484..11763648 | 179..15 | 825 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1612 | 2460..2542 | 144 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2394 | 2460..2514 | 140 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6918 | 2460..2532 | 133 | 66.2 | Plus |
BS25127.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 10:53:27 Download gff for
BS25127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lk6-RA | 812..4238 | 17..3443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:42 Download gff for
BS25127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lk6-RA | 812..4238 | 17..3443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:34 Download gff for
BS25127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lk6-RA | 812..4238 | 17..3443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:34 Download gff for
BS25127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11752974..11755111 | 1306..3443 | 100 | <- | Minus |
| 3R | 11755177..11755387 | 1095..1305 | 100 | <- | Minus |
| 3R | 11755449..11755671 | 872..1094 | 100 | <- | Minus |
| 3R | 11755735..11756246 | 360..871 | 100 | <- | Minus |
| 3R | 11756313..11756492 | 180..359 | 100 | <- | Minus |
| 3R | 11763484..11763646 | 17..179 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:42 Download gff for
BS25127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7578696..7580833 | 1306..3443 | 100 | <- | Minus |
| arm_3R | 7580899..7581109 | 1095..1305 | 100 | <- | Minus |
| arm_3R | 7581171..7581393 | 872..1094 | 100 | <- | Minus |
| arm_3R | 7581457..7581968 | 360..871 | 100 | <- | Minus |
| arm_3R | 7582035..7582214 | 180..359 | 100 | <- | Minus |
| arm_3R | 7589206..7589368 | 17..179 | 100 | | Minus |
BS25127.pep Sequence
Translation from 16 to 3444
> BS25127.pep
MVEPKSGTAASAAAAKASNNNNNNHPRGSGDSGIRSGSGISCSNTDNSCS
QSQSDGQNELTRYSSEDVSGNESSEAPNMTEVERQAELNRHKEEMQKKRR
KKRISSSLHSSTFQELYKLTGEILGEGAYASVQTCVNIYTDLEYAVKVID
KIPGHARARVFREVETFHHCQGHLGILQLIEFFEDDEKFYLVFEKINGGP
LLSRIQEHICFSEHEASQIIKEIASGLDFLHKKGIAHRDLKPENILCVKT
DSLCPIKICDFDLGSGIKFTTDISSPAATPQLLTPVGSAEFMAPEVVDLF
VGEAHYYDKRCDLWSLGVIAYILLCGYPPFSGNCGEDCGWNRGENCRTCQ
ELLFESIQEGHFSFPEAEWHDVSDEAKDLISNLLVKKASNRLSAEAVLNH
PWIRMCEQEPPASKHGRRHKALQTPSNIRRNHQSAREISQFAESAMAVKR
VVLQHFSMRYDYMKERPNIYQPSQAYMDAYSDENYNPKPPGHYTRNRSQR
NPASSLCGYGGRMSSMHGQRANSRRSSRNASRNASAIYPNSGGFKTLNVH
EEDDDDEGLEAFGHIDDDDEWSRSRREYQQQCETLGEDRFRRQSGSEGDE
VEDDEDGENEDYQHYKHYWRELDEEEGDDYLYEQQQRVDDKFGEEEFEDE
PKEETQADNLKLSKAYVEQVGETNVEKSKPQDDNGGYIREDLIMDNMDMK
KNTQQSEFAKLTIMRNDAQTEENKIMQQQDEEKKEEKQQDDVDGAKKQGP
SSDISATTITDNNKLQTPVMTTTHINNWQTGDAIEDDDVKLLDSISDLNE
KLPEIYETANIVVNSAAVPAASTPAASATRPPTDNPEEDDSNVTKPTTTA
EGTTMQTTFGMSAEEEKPVALSHTAGHHSKTGRTVNFAPDAYQNDEDADI
DEDDDYDDEENLHEHSKQQLPSNAYTRKQRQQHQRYIVPRYQLADQVPQR
QHTENWRYRTHHSQEQQPTADYRKYRPPFSTGGGGGHHGNQQRNYLGSFS
HSGGAAGYKIAPMPPPMQPPPRHNSAGSSGSGSGSGGSPPSDEQSAIRNW
RQDCVYARSCGMNQGPEQQRHNRSSGQRVQQQPRIGSGRFAHLQAAQLMD
ELPDMRIGLSPPSESVLLQRRLRQQQRANDLSEYCEPATASG*
BS25127.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lk6-PA | 1142 | CG17342-PA | 1..1142 | 1..1142 | 6082 | 100 | Plus |
| Lk6-PB | 1090 | CG17342-PB | 3..1090 | 55..1142 | 5804 | 100 | Plus |
| CaMKI-PI | 390 | CG1495-PI | 6..287 | 92..403 | 411 | 33.9 | Plus |
| CaMKI-PA | 405 | CG1495-PA | 6..302 | 92..403 | 409 | 34.1 | Plus |
| CaMKI-PG | 405 | CG1495-PG | 6..302 | 92..403 | 409 | 34.1 | Plus |
