BS25130.complete Sequence
1877 bp assembled on 2011-07-12
GenBank Submission: KX800484
> BS25130.complete
GAAGTTATCAGTCGACATGCCAATTGCGCTTTTCAAGTCCGTACGCGAAG
TGAGCAGCGAAGATGCGGTGCACGTAGCGGCGAATCTGCTCAAGGAAAAC
GCCGGCAAGAAGTGGCGAACCAAGGCGCCGGGAGAGAAATCCGCATACGT
TGTGCTGGAGTTCGAGGAGCCGCAACAGATTACGGGCATCGATATTGGCA
ACGAACATGCCGCCTTCATCGAGGTGCTGGTCAGTCGAACAGGCTGCCAG
GCGGACGATTTCCGCGAGCTGCTGCTATCCAGTTCGTTTATGACGCCCAT
CGAGAGCAAGAATTCCAGCAATCCAAATCGCGTTCGCTGTTTCAGTAGCA
CTTCGCTGGCGGAGAGTGCACTGCCGGAGAAGTGGAAGCTGCTTCAGATA
GTCTGCACACAGCCCTTCAATCGTCATGTGCCATACGGGCTCTCATTCGT
CAAGGTGCATGTAGTGGCTGCTGCGGCGCCTAAGGTCAAATCCCTAGTGC
CGCAGGGTGTTATGCAATTCGGGACCTTTAAGCTGCGCGAGGAGTCGCCG
GACTCGGAAACGGACAATCAAGTGAACAGATTTCACAGCTGGAAGAAGCA
GACGCAGCACAAGTCGCCCGCGATCAGTGCGACCTCCACAGCAGCGGCCA
TTCGGGACGCCGGCTCCACGGCCCTGCGAAGGCTGAGCGCTGGCAAGGTT
TCTAGCCTGGCTGCATCGCCCAAAACCTCGACGTCGCCATCACCAGTTCT
CAATGCTCTGCGATCGGTTTCTCCGACGCCATTGGATGCCAAGCCCCTGG
ATCGCAATCGAGCTTCACTCTTGTTCGGCGACGATGATGAGGACGTGAAG
GACGCTGAGGTCAATGCAAAGAAACAACGGCTGAGCAAGCATCTGGAGGC
GGACAAGGATCGACGGCGATTGGAGCAGGAAAAGGAGAGGGAGAGCAGAA
AGAAAAAGTCAAGCAGGCACTCCTTGGATAAGTCAATCAGCAAAGAAGAC
AAACCACCGGCAAAGGAGCACAATTCGTCCTCCAGAGAAAAATCCACAGC
CAAAGAAGAGAAAGAGCAATTACGAAAAGAGGAAAGATCGCATTCGAAGG
AGGAGAAGTCCAGGAGGAAGGAGAAATCTAAGCATGATCACAGATCTTCG
GACACCTCGAATTCCAAGGAAAGTTCGCGCCCAACTGCGCAAAAGCGACA
TTCATCTCCCACCGCAGTCGCAGTAACGCCCGCCAAAAAGCAAAAGATCG
TGGACACAGCGATTCAATACCGTCCCCTTAATCAGTTACTCAAGGGTGTG
GTCCTGGTCATCAGTGGCATACAGAATCCCGATCGTGCAGACTTGCGTTC
GAAAGCGGTCGCCTTGGGAGCCAAGTATAAGGCTGATTGGGGATCAGGAT
GTACCCATCTGATATGCGCATTCAAAAACACACCGAAATACAATCAAGTG
AAGGGCAAGGGCAAGATTGTGACACGCAGTTGGATCGAGAAATGTTATGA
GCTGAAGAAGTACCTGCCATGGCGACGTTACGCCCTGGATACCAATGACA
TTGGCCAGCCGGAGAGCGATGAGGAGCTTTGCGATGAGGCGACGAGGCCA
CGGCGCGATTCCAGCAAGGATGATGTGGCAATGCTAGAGGATAGCAAGCT
AACAGCTCTAGCGGATCAGAATGATGTGGAAATGAATCCAGATGCCTTAT
CGGGCATTGATACGGAAGATGAACTGCAGCGCGTGGCTGAGGAAAACAAA
ACGAAGAAAGCCAAACTAAGGACTACAGTAAAGACGAAATCGCAAGATAT
ATACGAAGTTAGTACCGATGAAGAGGATTATCTGGAGCTAAAGAAGAAAC
AAATCGATTAGAAGCTTTCTAGACCAT
BS25130.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| XRCC1-RA | 1845 | CG4208-PA | 1..1845 | 17..1861 | 9225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| XRCC1-RA | 2319 | CG4208-RA | 223..2071 | 13..1861 | 9230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5330213..5331470 | 67..1324 | 6290 | 100 | Plus |
| X | 23542271 | X | 5331682..5332010 | 1414..1742 | 1645 | 100 | Plus |
| X | 23542271 | X | 5332068..5332187 | 1742..1861 | 600 | 100 | Plus |
| X | 23542271 | X | 5331528..5331619 | 1322..1413 | 460 | 100 | Plus |
| X | 23542271 | X | 5330098..5330155 | 13..70 | 275 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:47:16 has no hits.
BS25130.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-12 09:41:45 Download gff for
BS25130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XRCC1-RA | 192..2036 | 17..1861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:43 Download gff for
BS25130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XRCC1-RA | 227..2071 | 17..1861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:27 Download gff for
BS25130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XRCC1-RA | 227..2071 | 17..1861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:27 Download gff for
BS25130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5331531..5331619 | 1325..1413 | 100 | -> | Plus |
| X | 5332069..5332187 | 1743..1861 | 100 | | Plus |
| X | 5330102..5330152 | 17..67 | 100 | -> | Plus |
| X | 5330214..5331470 | 68..1324 | 100 | -> | Plus |
| X | 5331682..5332010 | 1414..1742 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:43 Download gff for
BS25130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5224135..5224185 | 17..67 | 100 | -> | Plus |
| arm_X | 5224247..5225503 | 68..1324 | 100 | -> | Plus |
| arm_X | 5225564..5225652 | 1325..1413 | 100 | -> | Plus |
| arm_X | 5225715..5226043 | 1414..1742 | 100 | -> | Plus |
| arm_X | 5226102..5226220 | 1743..1861 | 100 | | Plus |
BS25130.pep Sequence
Translation from 16 to 1860
> BS25130.pep
MPIALFKSVREVSSEDAVHVAANLLKENAGKKWRTKAPGEKSAYVVLEFE
EPQQITGIDIGNEHAAFIEVLVSRTGCQADDFRELLLSSSFMTPIESKNS
SNPNRVRCFSSTSLAESALPEKWKLLQIVCTQPFNRHVPYGLSFVKVHVV
AAAAPKVKSLVPQGVMQFGTFKLREESPDSETDNQVNRFHSWKKQTQHKS
PAISATSTAAAIRDAGSTALRRLSAGKVSSLAASPKTSTSPSPVLNALRS
VSPTPLDAKPLDRNRASLLFGDDDEDVKDAEVNAKKQRLSKHLEADKDRR
RLEQEKERESRKKKSSRHSLDKSISKEDKPPAKEHNSSSREKSTAKEEKE
QLRKEERSHSKEEKSRRKEKSKHDHRSSDTSNSKESSRPTAQKRHSSPTA
VAVTPAKKQKIVDTAIQYRPLNQLLKGVVLVISGIQNPDRADLRSKAVAL
GAKYKADWGSGCTHLICAFKNTPKYNQVKGKGKIVTRSWIEKCYELKKYL
PWRRYALDTNDIGQPESDEELCDEATRPRRDSSKDDVAMLEDSKLTALAD
QNDVEMNPDALSGIDTEDELQRVAEENKTKKAKLRTTVKTKSQDIYEVST
DEEDYLELKKKQID*
BS25130.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| XRCC1-PA | 614 | CG4208-PA | 1..614 | 1..614 | 3124 | 100 | Plus |
