BS25132.complete Sequence
4025 bp assembled on 2011-07-19
GenBank Submission: KX802100
> BS25132.complete
GAAGTTATCAGTCGACATGAGTTCAAGTTGTGAAAGAATAGAATGGGTAG
AAATCATCGAGCCTCGCACCAAGGAGCACATGTACGCCAATCTCACCACG
GGCGAGTGTGTTTGGGATCCACCAGAAGATGTGCCAATTAAGCGGACCGA
CTCATCGCAGTGGTGGGAACTGTTTGATACGAATACCCAGCGGTTCTACT
ACTACAATGCGGCCACGCAGAAGACCGTGTGGCACCGGCCGAGTAAGTGC
GACATCATTCCGCTGGCGAAGCTGCAGACGCTCAAGCAGAACACCGATCC
CAGCGAGCGTCGCGAGCAGACAACGCCCCAAAAGCAGCAGCAGCAGCAGG
TGCAGCACGCTTCCCAGCAGCAGCAACATCCCTCGCCCATGTCGGGACCG
AACAAGAAAGGACGTGGCCAGCAGAGGATCAGCGGTGGCAACGGTACGGT
GGCGAGCTCGGAGGAGAAGCTAACCAGCAGCGAAGTGATCTCTAGTCCAC
GTGGTCGTCAAAGCTTTCGCGTTAGCACTGGTGACTCATCCCGGTCGATG
GACATGCAGCAGCAGCATCCGCAGGGCTATGCCTCCAGGCGTTCGCAAGA
CTCCTGCAATCAGTATAAGGAATCGGGCAAGTCAAGCGACTCTAGTCTGT
CCAGTGCGCATGGCTATAGGCGCTTCAATGACAGCGGCGTTCCGGTGTCA
GGACATCCGGATAACCTGCGTCTGGGTTCGCTGCAAAAGCAGCAGCGTGG
CGGTGGCAAGGACAATGGAGCTTTCGAGATGCTGCAAGAGAGCACCAGTT
CGCATAATTTACCGCATGGCAGCACCTCCACATCCTCATCCTACGCCGGT
GGCAGTGGCTATGGGGACAAGTATTTTGATCATCAGCTGCTGCCCAACCA
CCTGCAGGGCTATTCCTCCAAGTCGTCGGACATTGCCTCGCCAACACACT
CCATTCACACGCCCCAGTCGCAGAAGAAGAAGATGTCGCCGGATGCAGCG
CCCGCTGCACAATACAACTACGCACAACAGCAGCATCAGCAGAGAAGCGC
ACAACGTAGTGGCGGAGGAGCTGCTGGCACCGGAGCCCCAGCGGGAAAGT
CCTACGGAGGCGATCGCGAATACAAAGTATCGCTGGCCCGCTCCGGCAGT
TTCATGTCCTCTTCAATCAATCCCGCCGCCGCTGGCCACCACAGCAAATC
CTACCGCAAGAGCAGCGCAGAAGCAGCGAATGGAGGAGCTGCCAGCGATG
ACTCAATGCACGAAAAGTACTTCAAGTCAGTGGAAAACACACCGCTCTCG
CGTCGCCGCCACACCACCAATGCAACCAAGAGCGGAGGTGGAGCCAGTGG
CAGCAATACGGCCACCAGTACGGCGGGCAGCGGCAGCAGCAGCCACAAAA
AGCACTCGAGCGACTCTAGTCCGCAGAGTCCGATCAGTCCACAGACAAAA
AGTTCGCGGCAGGCTAAGACGAGTGCCACCAGTACGGTGCCACAGCTGCA
GCATTCACCGCGCCTGCAGGAGCCGAGTCACAGTCTAGATTTGCTGAGTT
TGGAAAGGATTTCGCTGGGAAAATCGGGTCCTATATCACCGGGAGGTGGG
ACAGAGAATCTTGGCCTGCTGACGCACTCGTCGCGCGGCTCCAACGACTC
TGCCCGCCAGCGCCAGAAGTCAAATAACTCCTCGGCGAACCGTTCGCAGT
CGCATCATTATCCCGGACAGAGCTCCTTGCGACATAGCGCCAGTTCTAGT
CTGGACAAACGAGGCTACCATGTGGGCGGAGGGAGTGGCGATGGAAGGGG
AGTAACAGGCGGTGAGAAGCGGCGCTCAAAGCAGCATCATTATCAACAGC
AGGCTGACAACAGCGACGTGGAGTACGACAATGGGAACACCTCGCCCTTG
TACACCAATTGGGACCAGGAAATGCCCCACCTGCTGCCTCTCAAACACTA
CATCATCGAGCAGGCAAAGTTGTCCGGTCGCTATGAATACCGTGGTGGCG
ATGGCGGAGATTCGGACTCGTACCACTCGGATAGCCAGTCGGAACACTCA
CTCTCAGGACACGAACCGGACAACGAGGACTCGGACGGCGGATCGGATAC
GCATGGCGGTTATCTGGAGCACAACTACGGCATGATCGACGACTACGCCA
ATATGGGTGATAGCGTATCCTACTACGCGTACATGTATCCGCCGCACGAT
CCCGCCGGAAGGGAAGATATCTCTGAAAACGTGGAGGCTGTGCTGGAGGG
AATTGGCGGCAATGCGACAGAACCTTCGGCTCCAACCGCCACCGCCCCCA
AGCCAAAGCCTCGTTACCAGATCTCATACTACGACACCGTATCGCACAGT
CCCTCTGCCGGAAGCGGCTATCACGGTCAGCAGCTTTACTCCAATACTCC
GCCCTACTCTGGGCACGGTCATGGACATCACGTTCCACCGCCGTCACTGC
CCCACCAGCAGCAGTTGCACCTGGAACCGAGCGACACTAAGCAGAAGCAG
TCGCAGACCCTGCCCTCCCCTAATCGGCAGATTTCACGTCTAGCTGGCGC
CGGTCATCAGGGATCGGGACCAGCTGCATCATCCAAAGAAGAGACCGGCC
ACAGTACCGTTGCCGGTCAACAGCAGGTTACCGTAGGCACTGTAACGCCA
GCCAGTCTTTCCCGACCTGGTCACAAGATGGCTCCGCCCTCGTTGAAGCC
CACCATCCAGCAAATCTTTCCACCCAGCGAACGGGCGCCAGGAATGGGCA
ACTTGGGATTGGGTGGACCTACGTTGGCCTGCATGAAAGAATGTGATATA
GAGAAATTCGCTGCCGACAATCTGAATTTGCACTCAAAGGGAATCTTCCG
GAAAAAGGCATCTGTTCGCGACATGCTTAGTTGGACGGCGGAGGCGATTA
GCAGACCCATGTTGGCATTGTCCCGGGACAAGGCGGACAAGAAGACGGCC
ATTGAACTGTTTAAGCTGGTGCAGATCTACATGGCGGATCGCAAGGCGCG
CATAGGCATGACTCTGAATTCAGTGGCCATAGAAATTATCAGTGCATCCC
TACCACAGCAGCAATTAAGAGACGAGCTATATGTCCAGTTGTGTCGGCAA
ACGACAGAGAATCCCAAGAGAGACTCGCTCATCCGCGGTTGGGAGCTGAT
GGCCATCTGTCTGTCATACGTACCCCCTTCGCCCACGTTTCAACCGACGC
TGCTCAATTATGTCAATCGGCACCGCGATCCATCGTTTGCCACGTGCTTC
ATGGAGGTTAGCAAGTGGCCCATCCATGTGCAAATCTCGCACTACGCAAC
TGTGTGCTGTCGCCGCTTGGATCGCATAGGTAGCAGTGGACGCCGAATGG
CCAAAAAGCCAACTGTAGATGAGGTGGAGCAAGCGCGGCAACAAATCTTA
AGGAACAGCATGTTTGGTAACACGCTTTCTGAAGTCATGGATCTCCAAAA
AGAGAAATTTCCTTTCCGTAAGCTGCCCTGGATACAGACAACACTATCAG
AGCATGTACTCCTGCTGAATGGAAAGCAGACTGAAGGAATCTTTCGAGTC
TCCGCGGATGTGGATGAAGTAGGTTGCATGAAGAACCGCCTGGATCGGTG
GGATGTTCCTGATTACAAAAACACGTTGGTTGATGCACACACGCCAGCCA
GTCTGCTTAAGCTGTGGTACCGAGAACTGTACGATCCACTTATACCGGAT
GCCTACTACGAAGATTGCGTAAACACAGAGGATCCCGACAAAGCCAAAGA
AATAGTTAATAAGTTGCCTGAAATAAATCAGCTGGTTCTAACGTATCTAA
TACATTTCCTACAACAATTCGCCATACCCGAGGTGGTGAGTTGCACCAAA
ATGGACTCCTCAAATCTGGCCATGGTGTTTGCGCCCAACTGCCTGCGCTG
TACATCGGAGGATCCGAAAGTGATCCTGGAGAACGCTCGCAAAGAGATGT
CCTTCATGCGCACCTTAATTCAGCACATGGACACAACGCACGTGGCCAAT
CTGGTCTAAAAGCTTTCTAGACCAT
BS25132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP93B-RA | 3993 | CG3421-PA | 1..3993 | 17..4009 | 19965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP93B-RA | 5353 | CG3421-RA | 558..4550 | 17..4009 | 19965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21086069..21087177 | 2220..1112 | 5545 | 100 | Minus |
| 3R | 32079331 | 3R | 21085162..21086004 | 3063..2221 | 4215 | 100 | Minus |
| 3R | 32079331 | 3R | 21088296..21088687 | 519..128 | 1960 | 100 | Minus |
| 3R | 32079331 | 3R | 21087432..21087772 | 1112..772 | 1705 | 100 | Minus |
| 3R | 32079331 | 3R | 21083846..21084071 | 4009..3784 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 21084719..21084899 | 3388..3208 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 21087876..21088049 | 771..598 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 21084133..21084290 | 3786..3629 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 21084960..21085103 | 3207..3064 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 21084353..21084476 | 3629..3506 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 21084534..21084655 | 3509..3388 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 21096091..21096184 | 128..35 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 21088116..21088196 | 599..519 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:00:01 has no hits.
BS25132.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 10:53:29 Download gff for
BS25132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP93B-RA | 536..4526 | 17..4007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:19 Download gff for
BS25132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP93B-RA | 558..4548 | 17..4007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:05 Download gff for
BS25132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP93B-RA | 558..4548 | 17..4007 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:05 Download gff for
BS25132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21087432..21087772 | 772..1112 | 100 | <- | Minus |
| 3R | 21084719..21084899 | 3208..3388 | 100 | <- | Minus |
| 3R | 21084960..21085103 | 3064..3207 | 100 | <- | Minus |
| 3R | 21087876..21088047 | 600..771 | 100 | <- | Minus |
| 3R | 21083848..21084070 | 3785..4007 | 100 | <- | Minus |
| 3R | 21084135..21084289 | 3630..3784 | 100 | <- | Minus |
| 3R | 21084353..21084476 | 3506..3629 | 100 | <- | Minus |
| 3R | 21084538..21084654 | 3389..3505 | 100 | <- | Minus |
| 3R | 21085162..21086004 | 2221..3063 | 100 | <- | Minus |
| 3R | 21086069..21087176 | 1113..2220 | 100 | <- | Minus |
| 3R | 21088116..21088195 | 520..599 | 100 | <- | Minus |
| 3R | 21088296..21088687 | 128..519 | 100 | <- | Minus |
| 3R | 21096092..21096182 | 37..127 | 100 | <- | Minus |
| 3R | 21097251..21097270 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:19 Download gff for
BS25132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16909570..16909792 | 3785..4007 | 100 | <- | Minus |
| arm_3R | 16909857..16910011 | 3630..3784 | 100 | <- | Minus |
| arm_3R | 16910075..16910198 | 3506..3629 | 100 | <- | Minus |
| arm_3R | 16910260..16910376 | 3389..3505 | 100 | <- | Minus |
| arm_3R | 16910441..16910621 | 3208..3388 | 100 | <- | Minus |
| arm_3R | 16910682..16910825 | 3064..3207 | 100 | <- | Minus |
| arm_3R | 16910884..16911726 | 2221..3063 | 100 | <- | Minus |
| arm_3R | 16911791..16912898 | 1113..2220 | 100 | <- | Minus |
| arm_3R | 16913154..16913494 | 772..1112 | 100 | <- | Minus |
| arm_3R | 16913598..16913769 | 600..771 | 100 | <- | Minus |
| arm_3R | 16913838..16913917 | 520..599 | 100 | <- | Minus |
| arm_3R | 16914018..16914409 | 128..519 | 100 | <- | Minus |
| arm_3R | 16921814..16921904 | 37..127 | 100 | <- | Minus |
| arm_3R | 16922973..16922992 | 17..36 | 100 | | Minus |
BS25132.pep Sequence
Translation from 16 to 4008
> BS25132.pep
MSSSCERIEWVEIIEPRTKEHMYANLTTGECVWDPPEDVPIKRTDSSQWW
ELFDTNTQRFYYYNAATQKTVWHRPSKCDIIPLAKLQTLKQNTDPSERRE
QTTPQKQQQQQVQHASQQQQHPSPMSGPNKKGRGQQRISGGNGTVASSEE
KLTSSEVISSPRGRQSFRVSTGDSSRSMDMQQQHPQGYASRRSQDSCNQY
KESGKSSDSSLSSAHGYRRFNDSGVPVSGHPDNLRLGSLQKQQRGGGKDN
GAFEMLQESTSSHNLPHGSTSTSSSYAGGSGYGDKYFDHQLLPNHLQGYS
SKSSDIASPTHSIHTPQSQKKKMSPDAAPAAQYNYAQQQHQQRSAQRSGG
GAAGTGAPAGKSYGGDREYKVSLARSGSFMSSSINPAAAGHHSKSYRKSS
AEAANGGAASDDSMHEKYFKSVENTPLSRRRHTTNATKSGGGASGSNTAT
STAGSGSSSHKKHSSDSSPQSPISPQTKSSRQAKTSATSTVPQLQHSPRL
QEPSHSLDLLSLERISLGKSGPISPGGGTENLGLLTHSSRGSNDSARQRQ
KSNNSSANRSQSHHYPGQSSLRHSASSSLDKRGYHVGGGSGDGRGVTGGE
KRRSKQHHYQQQADNSDVEYDNGNTSPLYTNWDQEMPHLLPLKHYIIEQA
KLSGRYEYRGGDGGDSDSYHSDSQSEHSLSGHEPDNEDSDGGSDTHGGYL
EHNYGMIDDYANMGDSVSYYAYMYPPHDPAGREDISENVEAVLEGIGGNA
TEPSAPTATAPKPKPRYQISYYDTVSHSPSAGSGYHGQQLYSNTPPYSGH
GHGHHVPPPSLPHQQQLHLEPSDTKQKQSQTLPSPNRQISRLAGAGHQGS
GPAASSKEETGHSTVAGQQQVTVGTVTPASLSRPGHKMAPPSLKPTIQQI
FPPSERAPGMGNLGLGGPTLACMKECDIEKFAADNLNLHSKGIFRKKASV
RDMLSWTAEAISRPMLALSRDKADKKTAIELFKLVQIYMADRKARIGMTL
NSVAIEIISASLPQQQLRDELYVQLCRQTTENPKRDSLIRGWELMAICLS
YVPPSPTFQPTLLNYVNRHRDPSFATCFMEVSKWPIHVQISHYATVCCRR
LDRIGSSGRRMAKKPTVDEVEQARQQILRNSMFGNTLSEVMDLQKEKFPF
RKLPWIQTTLSEHVLLLNGKQTEGIFRVSADVDEVGCMKNRLDRWDVPDY
KNTLVDAHTPASLLKLWYRELYDPLIPDAYYEDCVNTEDPDKAKEIVNKL
PEINQLVLTYLIHFLQQFAIPEVVSCTKMDSSNLAMVFAPNCLRCTSEDP
KVILENARKEMSFMRTLIQHMDTTHVANLV*
BS25132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP93B-PA | 1330 | CG3421-PA | 1..1330 | 1..1330 | 7031 | 100 | Plus |
| Mur89F-PC | 2158 | CG4090-PC | 522..1201 | 70..765 | 241 | 22.1 | Plus |
| Mur89F-PB | 2159 | CG4090-PB | 522..1201 | 70..765 | 241 | 22.1 | Plus |
| Samuel-PE | 846 | CG31868-PE | 297..770 | 106..595 | 165 | 21.6 | Plus |
| Samuel-PD | 846 | CG31868-PD | 297..770 | 106..595 | 165 | 21.6 | Plus |
