BS25133.complete Sequence
2396 bp assembled on 2011-07-19
GenBank Submission: KX805497
> BS25133.complete
GAAGTTATCAGTCGACATGGGACGCAAGGTGACCGTAGCGGTGTCCACAT
TGAATCAATGGGCATTGGACTTTGAGGGTAACATGGTGAGGATACTGCAG
TCCATTCTGGAGGCCAAGGACATGGGCGCCAGCTATCGCACGGGACCGGA
GCTGGAAGTTTGTGGCTACAGCTGCGAGGACCACTTTCGTGAGCCGGACA
CATTCCTGCACTCGTGGGAAGTGCTGCTGGAGGTGATGATGTCGCCCATG
TGTGAAAATATGCTGGTGGACGTGGGCATGCCGGTGATGCATCGCAATGT
GGCCTACAATTGTCGGGTGGCGTTCTTTAATCGCCAGATTCTGCTCATCC
GGCCCAAGATGGCCATGTGCGACGATGGCAATTATAGGGAGTCGCGATGG
TTTACCGCCTGGACGAAAGCCCTACAAACGGAGGAGTATGTGCTGCCGCG
AATGATTGCCCAGCATACGGGTCAGCAGACGGTTCCCTTTGGCGATGCAG
TGATAGCCACGAGGGATACCTGTTTGGGCTACGAGATCTGCGAAGAGCTG
TGGAATGTGCGCAGCAAGCACATCGAGATGTCGTTGGCCGGTGTGGAGCT
GATAGTGAACAGCTCCGGCAGCTATATGGAATTGCGAAAGGCGCATATCA
CCAGCGATCTCATTCGGAATGCCAGCTTCAAGGCCGGCGGAGCCTATCTC
TTTAGCAATCTTCGAGGTTGCGATGGTCAGCGAGTGTACTTCAATGGTTG
CTCGGCCATAGCCTTGAATGGTGAGATCCTGGCGCGCAGTCAGCAGTTCG
CACTGCAGGATGTGGAGGTCACGCTGGCCACCATCGATCTGGAGGAGATA
CGTGCCTATCGTGTTAGCCTGAGATCACGCTGCACGGCTGCTGCATCGGC
AGCGGAGTATCCAAGGATCCATTGTGACTTTGAGATGTCCACGCACAGTG
ACATATTCAAGACGTCGACGCCTCCTCTGAATTGGCCAATGCACACGCCT
GAGGAGGAGATTGCCCTGGGACCGGCCTGTTGGCTATGGGATTATCTGAG
GAGATCCGGTCAAGGGGGATTTTTCCTGCCCCTAAGCGGTGGTGTCGATT
CGAGTAGCTCGGCCACAATAGTGCACTCCATGTGCCGGCAAATCGTGCAG
GCTGTCCAGCAAGGCGACGCCCAGGTGCTTCACGATATCCGACAGCTTCT
GGCCGACTCGGACTATACACCGGATAATGCCGCCGGATTGTGCAATCGAT
TGCTGGTCACCTGCTATATGGGCAGTGTTAATAGCAGCAAGGAAACCCGT
CGACGGGCAGCCCAATTGGCCAATCAACTGGGCAGTTACCACATCGAGAT
TAGCATTGATTCGGCGGTGAATGCACTATTGAGCATATTCAATGCCGTCA
CTGGTTTAACGCCACGTTTCCGTACCCAGGGTGGATGTGCTCGACAGAAT
CTGGCATTGCAGAATATGCAATCGAGGATACGCATGGTCCTGGCCTACAT
CTTTGCCCAGTTGACGTTGTGGGTAAGAAACAGGCCCGGTGGCTTGCTCG
TCCTGGGCTCGGCCAATGTGGATGAATCGCTGCGCGGTTATCTCACCAAA
TATGACTGCTCCTCGGCGGACATTAATCCTATTGGTGGGATCTCCAAAAT
GGATCTACGCAGGTTTCTGACCTATGCCAAGGATAAATTCAACCTGCCCG
TGTTGGAGTCCATTATCGATGCCCCGCCCACCGCCGAGCTGGAACCGCTG
CAGGAGAACGGGGAGCTGCAGCAGACGGACGAGGCGGACATGGGAATGAC
CTATGCGGAGCTCTCCCAGTTCGGTCGCCTGCGCAAACAGTCATTTTGCG
GACCCTACAGCATGTTTTGCCACCTTGTTGCCACCTGGAAGAGCGACCTT
AGTCCCAAGGAGGTGGCCGAAAAGGTGAAGCACTTCTTCCTTTGCTACGC
CATTAATCGGCACAAGATGACCGTACTGACGCCGTCAGTGCACGCGGAGA
GCTACAGTCCCGATGATAATCGGTTCGATCATCGCCCCTTCTTGTATCGA
CCCAACTGGAGCTGGCAGTTCAAGGCCATTGACGACGAGGCGGAGAAACT
GCAACCGATCTACACACCATCTTCGGCTCAATTGCGCCCCAGCAGCGAGG
ACCTGTTGATCTCCACACAGAGATCCTCCCACCTGGACGACTCCAAGCAT
TCGTCTCCGTTGTCCTCGGCCTCGGCGTCCGCATCGATTGACGTGGGCAT
TTCAACGGCAGCGGTTCCGTTGCCCGGTGCAGCTGCCCCAGGCGGTCTCT
CCAAGAAGCCCAGTGGTTACTCAAAGGTGCACGTCAATGTGCTTGGCAAG
ATCAAGGATCGCACCGGTATTCCCGTCTAGAAGCTTTCTAGACCAT
BS25133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9940-RC | 2364 | CG9940-PC | 1..2364 | 17..2380 | 11820 | 100 | Plus |
| CG9940-RA | 2364 | CG9940-PA | 1..2364 | 17..2380 | 11820 | 100 | Plus |
| CG9940-RB | 2364 | CG9940-PB | 1..2364 | 17..2380 | 11820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9940-RC | 4320 | CG9940-RC | 701..3064 | 17..2380 | 11820 | 100 | Plus |
| CG9940-RA | 4321 | CG9940-RA | 702..3065 | 17..2380 | 11820 | 100 | Plus |
| CG9940-RB | 4375 | CG9940-RB | 583..2946 | 17..2380 | 11820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13686569..13688003 | 1686..252 | 7175 | 100 | Minus |
| X | 23542271 | X | 13685809..13686502 | 2380..1687 | 3470 | 100 | Minus |
| X | 23542271 | X | 13688258..13688403 | 162..17 | 730 | 100 | Minus |
| X | 23542271 | X | 13688072..13688162 | 252..162 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:00:19 has no hits.
BS25133.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 10:53:29 Download gff for
BS25133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9940-RA | 700..3063 | 17..2380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:28 Download gff for
BS25133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9940-RB | 583..2946 | 17..2380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:15 Download gff for
BS25133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9940-RB | 583..2946 | 17..2380 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:15 Download gff for
BS25133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13685809..13686502 | 1687..2380 | 100 | <- | Minus |
| X | 13686569..13688002 | 253..1686 | 100 | <- | Minus |
| X | 13688072..13688161 | 163..252 | 100 | <- | Minus |
| X | 13688258..13688403 | 17..162 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:28 Download gff for
BS25133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13579842..13580535 | 1687..2380 | 100 | <- | Minus |
| arm_X | 13580602..13582035 | 253..1686 | 100 | <- | Minus |
| arm_X | 13582105..13582194 | 163..252 | 100 | <- | Minus |
| arm_X | 13582291..13582436 | 17..162 | 100 | | Minus |
BS25133.pep Sequence
Translation from 16 to 2379
> BS25133.pep
MGRKVTVAVSTLNQWALDFEGNMVRILQSILEAKDMGASYRTGPELEVCG
YSCEDHFREPDTFLHSWEVLLEVMMSPMCENMLVDVGMPVMHRNVAYNCR
VAFFNRQILLIRPKMAMCDDGNYRESRWFTAWTKALQTEEYVLPRMIAQH
TGQQTVPFGDAVIATRDTCLGYEICEELWNVRSKHIEMSLAGVELIVNSS
GSYMELRKAHITSDLIRNASFKAGGAYLFSNLRGCDGQRVYFNGCSAIAL
NGEILARSQQFALQDVEVTLATIDLEEIRAYRVSLRSRCTAAASAAEYPR
IHCDFEMSTHSDIFKTSTPPLNWPMHTPEEEIALGPACWLWDYLRRSGQG
GFFLPLSGGVDSSSSATIVHSMCRQIVQAVQQGDAQVLHDIRQLLADSDY
TPDNAAGLCNRLLVTCYMGSVNSSKETRRRAAQLANQLGSYHIEISIDSA
VNALLSIFNAVTGLTPRFRTQGGCARQNLALQNMQSRIRMVLAYIFAQLT
LWVRNRPGGLLVLGSANVDESLRGYLTKYDCSSADINPIGGISKMDLRRF
LTYAKDKFNLPVLESIIDAPPTAELEPLQENGELQQTDEADMGMTYAELS
QFGRLRKQSFCGPYSMFCHLVATWKSDLSPKEVAEKVKHFFLCYAINRHK
MTVLTPSVHAESYSPDDNRFDHRPFLYRPNWSWQFKAIDDEAEKLQPIYT
PSSAQLRPSSEDLLISTQRSSHLDDSKHSSPLSSASASASIDVGISTAAV
PLPGAAAPGGLSKKPSGYSKVHVNVLGKIKDRTGIPV*
BS25133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9940-PC | 787 | CG9940-PC | 1..787 | 1..787 | 4117 | 100 | Plus |
| CG9940-PA | 787 | CG9940-PA | 1..787 | 1..787 | 4117 | 100 | Plus |
| CG9940-PB | 787 | CG9940-PB | 1..787 | 1..787 | 4117 | 100 | Plus |
