BS25140.complete Sequence
1049 bp assembled on 2011-06-27
GenBank Submission: KX804611
> BS25140.complete
GAAGTTATCAGTCGACATGGCAAATCGCGCAAATCGTCATGCTGCTCGCA
CCGAGGATTCGGATAATACCATTAACTACGTCCAATGCGACGGACTGGCC
GTCATGAAGATGGTGAAGCACTGCCATGAGGAGTCGAGCAACATGGACCT
CGCCCAGGGCGCCCTGCTCGGTCTGGTGGTAGACAAGTGCCTGGAGATCA
CCAACTGCTTCCCGTTTCCCAAGAGCGGCGATGAGACCATGGACGAGGAG
ATGTACCAGCTGACCGTGATGCGTCGCCTGCGTCGCGTCAACGTAGATCA
TCTCCATGTGGGCTGGTACCAGAGCTCCGACGTGGGCAACAGCCTGTCAA
TGGCTCTGTTGGAATCGCAGTACCACTACCAGACCAGCATTGAAGAGTCC
GTCGTTGTCGTCTACGATACGCAGAAGTCATCCCGCGGATTCCTGTGCTT
GAAGGCCTACCGCCTTACTCCGCAGGCCATTCAGATGTACAAGGATGGCG
ACTTCACTCCAGAGGCATTCCGCACCCTGAAGGTCGGCTACGAGAACCTC
TTCGCCGAGATTCCCATTGTGATCAAGAACTCGCCGCTGACCAACATTAT
GATGAGCGAGCTGAACGAGCTGCTGCCCGAGGACAAGGGGCACAACTTCC
TGGACCTGGGCACCGCCACCGTATTGGAGAACCAAATGCGTAGCCTGATC
GAGCGCGTCGACGAGTTGTACCAGGAGGCAGTGCGCTATAACAAGTACCA
GCAGGTGGTCTTCAAGCAGGATACGGAGAAGCACCGTGCTCTGGCTAAGC
TGGCCGCCGAGAACGCCGTTCGCACATCGAAGGGAGAGCCCACGGTGCCA
GAGGAGGAAGTGATCAAACAGTTCCGCCCCATGACTGCGCCCAACCGCCT
GACGGCCACCATAACCTCTGGCCAGATCAATACCCACGCCCAGCATATCG
CACAATTCTGTTCGCAATCGCTGGCCAAACTCTTCATCACGGAATCGCTG
CAAATTGCCAAGGAAGCAAAGGAAACCAAATAGAAGCTTTCTAGACCAT
BS25140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p40-RB | 1017 | CG9124-PB | 1..1017 | 17..1033 | 5085 | 100 | Plus |
| eIF-3p40-RA | 1017 | CG9124-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p40-RB | 1182 | CG9124-RB | 40..1063 | 11..1034 | 5105 | 99.9 | Plus |
| eIF-3p40-RA | 1496 | CG9124-RA | 354..1377 | 11..1034 | 5105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5051636..5052315 | 776..97 | 3400 | 100 | Minus |
| 2L | 23513712 | 2L | 5051312..5051571 | 1034..775 | 1300 | 100 | Minus |
| 2L | 23513712 | 2L | 5052654..5052741 | 98..11 | 425 | 98.9 | Minus |
Blast to na_te.dros performed 2014-11-26 15:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 8315..8386 | 648..717 | 121 | 67.1 | Plus |
BS25140.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:42 Download gff for
BS25140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RB | 58..1068 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:14 Download gff for
BS25140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RA | 360..1370 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:33 Download gff for
BS25140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p40-RA | 360..1370 | 17..1027 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:33 Download gff for
BS25140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5051319..5051570 | 776..1027 | 100 | <- | Minus |
| 2L | 5051637..5052314 | 98..775 | 100 | <- | Minus |
| 2L | 5052655..5052735 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:14 Download gff for
BS25140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5051319..5051570 | 776..1027 | 100 | <- | Minus |
| arm_2L | 5051637..5052314 | 98..775 | 100 | <- | Minus |
| arm_2L | 5052655..5052735 | 17..97 | 100 | | Minus |
BS25140.pep Sequence
Translation from 16 to 1032
> BS25140.pep
MANRANRHAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGAL
LGLVVDKCLEITNCFPFPKSGDETMDEEMYQLTVMRRLRRVNVDHLHVGW
YQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRL
TPQAIQMYKDGDFTPEAFRTLKVGYENLFAEIPIVIKNSPLTNIMMSELN
ELLPEDKGHNFLDLGTATVLENQMRSLIERVDELYQEAVRYNKYQQVVFK
QDTEKHRALAKLAAENAVRTSKGEPTVPEEEVIKQFRPMTAPNRLTATIT
SGQINTHAQHIAQFCSQSLAKLFITESLQIAKEAKETK*
BS25140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p40-PB | 338 | CG9124-PB | 1..338 | 1..338 | 1736 | 100 | Plus |
| eIF-3p40-PA | 338 | CG9124-PA | 1..338 | 1..338 | 1736 | 100 | Plus |
