Clone BS25141 Report

Search the DGRC for BS25141

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:251
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptRpS3A-RA
Protein status:BS25141.pep: gold
Sequenced Size:839

Clone Sequence Records

BS25141.complete Sequence

839 bp assembled on 2011-06-27

GenBank Submission: KX804838

> BS25141.complete
GAAGTTATCAGTCGACATGGCAGTCGGCAAAAATAAAGGTCTTTCCAAGG
GTGGTAAGAAGGGCGGTAAGAAGAAGGTGGTGGACCCGTTTTCTCGCAAG
GACTGGTACGATGTCAAAGCTCCGAATATGTTTCAAACCCGTCAAATCGG
TAAAACACTTGTAAACCGCACCCAGGGTCAAAGAATAGCATCGGATTATT
TGAAGGGTCGCGTTTTCGAAGTGTCTTTAGCAGACTTGCAAAAGGATATT
GATCCAGAACGTTCTTTTCGCAAGTTCCGTCTTATTGCAGAAGATGTTCA
AGACCGTAATGTGCTCTGTAACTTTCACGGAATGGACTTGACTACGGACA
AGTACAGGTCGATGGTTAAAAAGTGGCAAACACTAATTGAAGCTATTGTC
GAAGCAAAGACTGTAGATGGGTACCTCTTGCGAGTGTTTTGTATCGGATT
TACTGCCAAGGATCAGCAGTCTCAGCGCAAAACATGTTATGCTCAGCAAT
CGCAAGTCCGAAAGATTCGTGCTCGCATGACCGACATTATTACTAATGAA
GTTAGTGGTGCCGATCTAAAGCAGCTTGTTAACAAGCTGGCCTTGGACTC
GATTGCGAAAGATATCGAAAAAAGCTGTCAGCGCATATATCCATTACATG
ATGTTTACATTCGTAAAGTAAAGGTATTGAAGAAACCGCGCTTCGATGTC
TCAAAGCTTCTGGAATTGCATGGCGATGGCGGTGGCAAATCCGTGGAAGC
CGTTGTTTCATCCGAGGGAGCCGTAATCGACCGCCCTGAAGGTTATGAGC
CCCCAGTACAGGAAGCTGTTTAAAAGCTTTCTAGACCAT

BS25141.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-RF 807 CG2168-PF 1..807 17..823 4035 100 Plus
RpS3A-RA 807 CG2168-PA 1..807 17..823 4035 100 Plus
RpS3A-RB 657 CG2168-PB 39..657 205..823 3095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-RF 1349 CG2168-RF 26..835 15..824 4050 100 Plus
RpS3A-RA 910 CG2168-RA 26..835 15..824 4050 100 Plus
RpS3A-RB 854 CG2168-RB 160..779 205..824 3100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 66272..66740 824..356 2345 100 Minus
4 1348131 4 66838..67182 359..15 1725 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:44:27 has no hits.

BS25141.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:43 Download gff for BS25141.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RA 58..862 17..821 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:20 Download gff for BS25141.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RA 28..832 17..821 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:38 Download gff for BS25141.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3A-RA 28..832 17..821 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:38 Download gff for BS25141.complete
Subject Subject Range Query Range Percent Splice Strand
4 66840..67180 17..357 100   Minus
4 66275..66738 358..821 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:20 Download gff for BS25141.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 86901..87364 358..821 100 <- Minus
arm_4 87466..87806 17..357 100   Minus

BS25141.pep Sequence

Translation from 16 to 822

> BS25141.pep
MAVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVN
RTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVL
CNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQ
QSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI
EKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSE
GAVIDRPEGYEPPVQEAV*

BS25141.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3A-PF 268 CG2168-PF 1..268 1..268 1373 100 Plus
RpS3A-PA 268 CG2168-PA 1..268 1..268 1373 100 Plus
RpS3A-PB 218 CG2168-PB 14..218 64..268 1043 100 Plus