BS25147.complete Sequence
2180 bp assembled on 2011-07-19
GenBank Submission: KX806490
> BS25147.complete
GAAGTTATCAGTCGACATGTTCTATGAGCACATTATTTTGGCCAAGAAAG
GCCCCCTAGCCAGGATCTGGTTGGCAGCACATTGGGACAAAAAAATTACA
AAGGCCCATGTATTTGAAACTAATATTGAAAAATCAGTGGAAGGGATTTT
GCAACCAAAAGTAAAATTAGCGTTGAGAACGTCTGGACATTTATTGCTAG
GTGTTGTTCGCATTTATTCCAGAAAAGCGAAGTATTTATTAGCTGATTGC
AATGAAGCCTTTGTCAAGATTAAGATGGCTTTTCGACCAGGCATGGTCGA
CTTACCAGAAGGGCACAGAGAAGCTAATGTTAATGCAATAACACTCCCAG
AAGTTTTTCATGACTTTGATACAGCCCTGCCCGAATTAAACGATATTGAT
ATTGAGGCTCAGTTTTCTATAAATCAGTCCAGAGCTGACGAGATAACAAT
GAGAGAAGATTACGGTAGTTTGTCTCTTTCCTTACAAGATGACGGATTTG
GTGATATAGGCTTTGAAGCAGAAACGCCTGAAATTATACGATGCTCTATA
CCTTCAAATATTAATGATAAAATATTTGATAATGACGTTTTGGAAAATAT
TGAGTCTCTGGATCCACATTCATTGGACGCCCATGCTGATATGCCTGGTT
CTCGATTGGATGGTGATGGGTTTGGAGATTCTTTTGGACAACCAGCCCTT
TTTGAAGACGATCTTTTTGGTGATCCTTCTCAACCAGTTGAGCAGATTAC
AAAAGAATCTACTACTGTTCTCAACGCAGATGATTCTGATGAAGACGCCA
TTGATAATATTCATAATGTCCCTTCGCCTGCAACCTCGCTCGTTAATTCG
ATTGAAGATGAGAAAGAGGAAAATAATTTAAATGGACATGCAAGTGTGTC
CGAAAATGTGCCAATGAATGAAATAACGCTTGTTCAAAACGAGGATGAGG
GATTTGCGTTAGCTCCTTTAGATGTCTCAATGTATAAAGGCGTTACAAAA
GCCAAACGCAAAAGAAAACTTATTATTGACGAAATAAAAAATATTTCTGG
AGAGGAAATGAAGGCTCAGTTAGCCGACACATCTGATATATTAACCACAC
TTGATTTAGCCCCACCAACAAAAAGATTAATGTATTGGAAAGAAACTGGA
GGTGTCGAAAAACTTTTTTCATTACCATCGCGATCCATACCAGCTAGAGC
TTTGTTTGGTAATTACAATAGACAGTTGTTTTCGCATTCAACATTCTTTG
AGGACTTCTCGAGTGTTGTGCCAATGGAAATTCTTGCACTGGAATTTTAT
ACCAAAGAGAACGAGAACGCATTAATTATTTTTAATAAAAAAGGTCGCAA
ACGTAAGAATGATAATATGTCCAATTTGTTTTTGGACCATGTCCCCGATT
CAGTTGTTCAAAGTTTGGAAGCTCCGGAAGTCCTGAGAGCGAATCATAAA
TCTCTAGGGGTATCTACCGTTTCTGTGGAGATTGTATCAAAAGAGCAAGA
AAGCATTTCATGTCAAAATGAATTAACATTTTTTGATAATATGCGAAGTC
CGGACCTCTTGTCCTTAAATGAAATGGAACAGTTCTCATCAATAAATGAG
CTACCTTTAACACCAAGAAACATGAATCATGAAATGGGTGACGATTTTAA
TCAAGGAGACTCAACGCCAGCTGGGTTGGATCATGGTCATGCCACTCCGC
AGCATGGAAATATTGGCGAGATGGATCACGACTCTGTTATACCGACAAAA
AAGACTGCAGTCATTTTAAATGAATCTGTGGGTACATCTGTACTAAGTGA
CAATGGCGTTTCAAAAAGGACAAATAATATTTTAAAAGGATGGGACAACT
ATGAAATTCCCAGTTTCGTTGGCCAGAATCATGGTGATGAACAAATGGAA
AATGAAACCGATGAGCAATTTGAAGAACGTGTTTTAAACAAGAGAGCCGC
CCACCTTTTTATTGACGTAAGAGCACATTTTATCGCCAAGGACAGCTTGG
AACTTTCTCAGCTTACGTCAGGAAATTCCAGAAAACAGGCGGCACAAAAA
TTTTATTCCCTCCTCGTCTTAAAGAAGTTTAAGGTGCTTCACATTGATCA
ATCTGCTCCCTATGCAGATATTACTATTACTCGAGGACCAACGTTCGAAA
ACCCAAAAATTTAAAAGCTTTCTAGACCAT
BS25147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vtd-RA | 2148 | CG17436-PA | 1..2148 | 17..2164 | 10740 | 100 | Plus |
| vtd-RB | 1902 | CG17436-PB | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vtd-RA | 2299 | CG17436-RA | 88..2235 | 17..2164 | 10740 | 100 | Plus |
| vtd-RB | 2527 | CG17436-RB | 88..1947 | 17..1876 | 9300 | 100 | Plus |
| vtd-RB | 2527 | CG17436-RB | 2176..2463 | 1877..2164 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 27146943..27147695 | 1124..1876 | 3765 | 100 | Plus |
| 3L | 28110227 | 3L | 27136944..27137237 | 273..566 | 1470 | 100 | Plus |
| 3L | 28110227 | 3L | 27136612..27136869 | 17..274 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 27146627..27146883 | 869..1125 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 27146395..27146574 | 690..869 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 27156008..27156172 | 1875..2039 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 27157807..27157935 | 2036..2164 | 645 | 100 | Plus |
| 3L | 28110227 | 3L | 27140119..27140242 | 566..689 | 620 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 4232..4326 | 658..562 | 127 | 64.3 | Minus |
BS25147.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 10:53:30 Download gff for
BS25147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vtd-RA | 99..2239 | 22..2162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:41 Download gff for
BS25147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vtd-RA | 93..2233 | 22..2162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:25 Download gff for
BS25147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vtd-RA | 93..2233 | 22..2162 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:25 Download gff for
BS25147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 27157810..27157933 | 2039..2162 | 100 | | Plus |
| 3L | 27136617..27136869 | 22..274 | 100 | -> | Plus |
| 3L | 27136946..27137236 | 275..565 | 100 | -> | Plus |
| 3L | 27140119..27140242 | 566..689 | 100 | -> | Plus |
| 3L | 27146395..27146574 | 690..869 | 100 | -> | Plus |
| 3L | 27146628..27146883 | 870..1125 | 100 | -> | Plus |
| 3L | 27146945..27147695 | 1126..1876 | 100 | -> | Plus |
| 3L | 27156010..27156171 | 1877..2038 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:41 Download gff for
BS25147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 2265174..2265297 | 2039..2162 | 100 | | Plus |
| 3LHet | 2243669..2243921 | 22..274 | 100 | -> | Plus |
| 3LHet | 2243998..2244288 | 275..565 | 100 | -> | Plus |
| 3LHet | 2247454..2247577 | 566..689 | 100 | -> | Plus |
| 3LHet | 2253759..2253938 | 690..869 | 100 | -> | Plus |
| 3LHet | 2253992..2254247 | 870..1125 | 100 | -> | Plus |
| 3LHet | 2254309..2255059 | 1126..1876 | 100 | -> | Plus |
| 3LHet | 2263374..2263535 | 1877..2038 | 100 | -> | Plus |
BS25147.pep Sequence
Translation from 16 to 2163
> BS25147.pep
MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVK
LALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGH
REANVNAITLPEVFHDFDTALPELNDIDIEAQFSINQSRADEITMREDYG
SLSLSLQDDGFGDIGFEAETPEIIRCSIPSNINDKIFDNDVLENIESLDP
HSLDAHADMPGSRLDGDGFGDSFGQPALFEDDLFGDPSQPVEQITKESTT
VLNADDSDEDAIDNIHNVPSPATSLVNSIEDEKEENNLNGHASVSENVPM
NEITLVQNEDEGFALAPLDVSMYKGVTKAKRKRKLIIDEIKNISGEEMKA
QLADTSDILTTLDLAPPTKRLMYWKETGGVEKLFSLPSRSIPARALFGNY
NRQLFSHSTFFEDFSSVVPMEILALEFYTKENENALIIFNKKGRKRKNDN
MSNLFLDHVPDSVVQSLEAPEVLRANHKSLGVSTVSVEIVSKEQESISCQ
NELTFFDNMRSPDLLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQGDST
PAGLDHGHATPQHGNIGEMDHDSVIPTKKTAVILNESVGTSVLSDNGVSK
RTNNILKGWDNYEIPSFVGQNHGDEQMENETDEQFEERVLNKRAAHLFID
VRAHFIAKDSLELSQLTSGNSRKQAAQKFYSLLVLKKFKVLHIDQSAPYA
DITITRGPTFENPKI*
BS25147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vtd-PA | 715 | CG17436-PA | 1..715 | 1..715 | 3685 | 100 | Plus |
| vtd-PB | 633 | CG17436-PB | 1..620 | 1..620 | 3201 | 100 | Plus |
