BS25152.complete Sequence
1385 bp assembled on 2011-06-27
GenBank Submission: KX802022
> BS25152.complete
GAAGTTATCAGTCGACATGGACACCGCTGCCGCCGCCGCCGCTGCAGTCG
CCGTTGACCTGAAACCCGATCAGCAGCTGCTGGGCAGCTCCACAAAGACC
AGGATTGGAGGAGGAAGCACTGGATGCGACTGCCTGGGCAGCACCGTGGA
GACCATGTCGCTGACTCCGCCACCCACGCCGCCTACACGCGCCATTGATG
GCCAAGTGGAAGCGTGTGGAGCTCCAGGCATCCCAAGTGCTCCCGCTGAG
ACCCATTCCCTGAACGGAATGAAAGGCAAGGAGGCGCCGGAAACAGCAAC
CGCAATAGCATCCACTGAACCCACTCAGCCGGATACTCCCGCCACATCAT
CCACGTCTTCCGCCAAAGCTTCCACCACGCCAACGTCTGCCTTGCTGGGA
TCGGGATCAGCAACAGGCTCGGTAGTCCCTGCAGCGGAGCATCCACCAGC
TGCAGCTGCATCGGTGCCTAGTAGCAGTGCCAGCAACTCCAGCAGCAGCA
GCAGCAGTTCCGGATCCGACGGGAATGTGGTCCAACTGCTGCCCTGGCAG
GACATGCCCACGTATCTTCAGTTCAACCCCTACGTACTCCGGGGTTACAG
ACCGCTTCAGACCTTCAAAGGATGCCTCCTCAGCCTGTTCTACTGGCACA
ACGAGTCCATCAACATACTGACACATGCCATACCCATCTTCTACATCCTG
GCCATCGTGCCCGGACTGATGCCCTGGGACAGTGGCTACAAGTTCCTGTC
CTTCTGCCACGTCTTCGGATCGGTGGCTCCCTGGTGCGGCAGCTTCGTCT
ACCACCTTTTCATGAACATCGAGAAGGGCGAGAACGTCTACTACACGCTG
CTCAAGTTGGACATGGTCGGGATCTGGGTGAGCCAGAGCTTTGGTGCCCT
GCCCCTGGTCACAGCCACCACTCTGTGCTTCCCCCCCGTGCTCAAGTGGC
TCATTATTGTTTCCTACTGCGTGCTCTCGCTGTGGGGCCTCTACAAGGCT
CTAACTGCCAGCTCACCCTGGCAGCGTCGCTTGTGCTTCGCCCTGCCCTT
CGCCATGCGCTCGATTCTGACCTTCCTGCGCATCCGTGGAATGGTGGGCG
GCAGTCACATGGCCCTTTCCCATGTCTACCTGCAGGACGGCGTCTCCATA
CTGGGCGGTGCCATAGGAGCGATGCGAATCCCGGAGAAGTGGTTTCCCGG
AGTGGTGGACTTCTATTTGAACTCCCACAATATAATGCATGTGCTGGTCG
TCGTGGCCGTTTACTCCATGCACAAGGCCACCATCAAGGACTTCGAGTGG
ATGTCGACGCAGACTTGCCACACCGCCGCCAACGCCACCGAGCAGGCTCT
AGGTCACGTGGAGCTATGAAAGCTTTCTAGACCAT
BS25152.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33203-RD | 1353 | CG33203-PD | 1..1353 | 17..1369 | 6750 | 99.9 | Plus |
| CG33203-RF | 1503 | CG33203-PF | 1..1362 | 17..1369 | 6625 | 99.3 | Plus |
| CG33203-RE | 1362 | CG33203-PE | 1..1362 | 17..1369 | 6625 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33203-RD | 3228 | CG33203-RD | 487..1840 | 16..1369 | 6755 | 99.9 | Plus |
| CG33203-RF | 3243 | CG33203-RF | 487..1849 | 16..1369 | 6630 | 99.3 | Plus |
| CG33203-RE | 3243 | CG33203-RE | 487..1849 | 16..1369 | 6630 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28886256..28886917 | 677..16 | 3310 | 100 | Minus |
| 3R | 32079331 | 3R | 28875049..28875268 | 896..677 | 1085 | 99.5 | Minus |
| 3R | 32079331 | 3R | 28872151..28872295 | 1277..1133 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 28872519..28872659 | 1136..996 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 28872716..28872821 | 998..893 | 530 | 100 | Minus |
| 3R | 32079331 | 3R | 28872000..28872095 | 1369..1274 | 480 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6928 | 284..455 | 120 | 55.2 | Plus |
BS25152.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:32 Download gff for
BS25152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33203-RB | 659..2010 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:57 Download gff for
BS25152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33203-RD | 488..1839 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:38 Download gff for
BS25152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33203-RD | 488..1839 | 17..1368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:38 Download gff for
BS25152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28872520..28872657 | 998..1135 | 100 | <- | Minus |
| 3R | 28872717..28872820 | 894..997 | 100 | <- | Minus |
| 3R | 28875052..28875267 | 678..893 | 99 | <- | Minus |
| 3R | 28872001..28872092 | 1277..1368 | 100 | <- | Minus |
| 3R | 28872152..28872292 | 1136..1276 | 100 | <- | Minus |
| 3R | 28886256..28886916 | 17..677 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:57 Download gff for
BS25152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24697723..24697814 | 1277..1368 | 100 | <- | Minus |
| arm_3R | 24697874..24698014 | 1136..1276 | 100 | <- | Minus |
| arm_3R | 24698242..24698379 | 998..1135 | 100 | <- | Minus |
| arm_3R | 24698439..24698542 | 894..997 | 100 | <- | Minus |
| arm_3R | 24700774..24700989 | 678..893 | 99 | <- | Minus |
| arm_3R | 24711978..24712638 | 17..677 | 100 | | Minus |
BS25152.pep Sequence
Translation from 16 to 1368
> BS25152.pep
MDTAAAAAAAVAVDLKPDQQLLGSSTKTRIGGGSTGCDCLGSTVETMSLT
PPPTPPTRAIDGQVEACGAPGIPSAPAETHSLNGMKGKEAPETATAIAST
EPTQPDTPATSSTSSAKASTTPTSALLGSGSATGSVVPAAEHPPAAAASV
PSSSASNSSSSSSSSGSDGNVVQLLPWQDMPTYLQFNPYVLRGYRPLQTF
KGCLLSLFYWHNESINILTHAIPIFYILAIVPGLMPWDSGYKFLSFCHVF
GSVAPWCGSFVYHLFMNIEKGENVYYTLLKLDMVGIWVSQSFGALPLVTA
TTLCFPPVLKWLIIVSYCVLSLWGLYKALTASSPWQRRLCFALPFAMRSI
LTFLRIRGMVGGSHMALSHVYLQDGVSILGGAIGAMRIPEKWFPGVVDFY
LNSHNIMHVLVVVAVYSMHKATIKDFEWMSTQTCHTAANATEQALGHVEL
*
BS25152.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33203-PD | 450 | CG33203-PD | 1..450 | 1..450 | 2365 | 100 | Plus |
| CG33203-PF | 500 | CG33203-PF | 1..453 | 1..450 | 2351 | 99.3 | Plus |
| CG33203-PE | 453 | CG33203-PE | 1..453 | 1..450 | 2351 | 99.3 | Plus |
| AdipoR-PB | 362 | CG5315-PB | 84..334 | 177..416 | 200 | 27.3 | Plus |
| AdipoR-PE | 444 | CG5315-PE | 166..416 | 177..416 | 200 | 27.3 | Plus |
