BS25163.complete Sequence
1562 bp assembled on 2011-06-27
GenBank Submission: KX804265
> BS25163.complete
GAAGTTATCAGTCGACATGCTGCTGAAGATACGCCACGCCCTGTTGGAGG
TCACCAGTCCACCGGCTGCAAAACAGTCCGCGATCATTATTAACAACGAA
CTCATCATCAGTTCTGGAAGCATTCTGCAACCACATTTGGCCGTAGACGG
GGACAAAGGAGCGCAGAACAAGGCAATTGTTGCCAGATTGCAGAGGGGTC
AACTGCTGGATGTTCAGAATGAGGAGCAGGAAGAGGATGCGCAGATCCGC
TCACTACATTTTGTGGCCACCTTCGATCCGCAGCAACGACGGCCGAGGCC
AATCGCAGCACCTGGGTCGAGGCAACCACACATCCTCTCCCGCTTCACTG
CCCATCCGCTGTACGTGTTTTGTGCGAACGAAGTTTGCCGCAACCTGCAC
CACATACTACTCACCGCTGACTCCGGCGATGCGGGTGAGGTGCTGCGCTC
CAGTTTCGTGGTGCTGGGCCTGCGGAAGCCCGAAAAGGAGAAGTCCTTCA
AGCGCTTCCTCGCGCACATCGCTAACTACTTGCGATACCTGCAGCCCATG
CACACTTTGGACGACGTGCTGGTCATGTGCTCGCCCTTTGGCCTGGAGAA
CTTTTACAAGACCATCAGCATTGGAAAGGTGTCTAATGTTATGGGACGAA
GTGGCTGCTTGTTTGCCATTTCAAACGCTTTGCCCCTGGGCTGTGAAGGC
TCTGCAGTGTTCAACAACAAGCTGCGGCTCGTTGGCATTGTGATATGCAC
CTCATTTCAACGCCATCACGAAAACGTCAACCTCACTCTGGCCGCAAACT
TTGGCTACCTTTTGCGCAACTTTATGGAACAACTGGGCATGTCTACTACA
GCATTCCAGCTGAGTCGAGAGCCGTCGAGCTTTGCCTGGGAGCGCACCAT
TGTGGTCATAGAGTCGGCGGGTCAACAAGGTACCGGGACCTTCATAAGAG
TACACAACAAGCGCTTTATCCTCACTTGTGCACATGTGGTGGGACAGAAC
ATTGAGACTGTTAATTGCCGTGCTGCCGATCGCGAGTTCCAGTCTGAGGT
GATTTGGTGCAATCCGGACAGCGATAAGCCCTTCGACTTGGCTCTACTCA
CAGCTCCGCAGGATGTGCCGGAGCAATGCTGCGTGCGACTGGCCAGGAGT
CCGGCCACCGTCGGGCAAATGGTGTACAACGCCGGGTTTCCCTACTACGT
TAACTTCAGCTTCAGGCACGACTTCAACCCTTCGATTTTTCAAGGGAGGG
TCATCAAGTGCGACACCGGGGCCATTATGTCCGATGGCAGCGTGCAGGCG
GGCCAAAGTGGAGGACCGATGTTCGACCAGAATGGATGCATCCTAGGCGT
TTGTGTGTCCAACATTAAATTAGACGACGTCGTCTACCCAAACATAAATA
CAGCCATTCCAATTTGTGATATCCGCAACACGTTGCAGCAGTTTGCACGC
ACCAACGACTTAAATGTGCTTAGCAACCTGGTAGCCAGTCCAGATGTACA
CCGCGTGTGGTCTCTGGAAATGCCCCCCATTCGCAGCAAACTCTGAAAGC
TTTCTAGACCAT
BS25163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3589-RA | 1530 | CG3589-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3589-RA | 1772 | CG3589-RA | 101..1630 | 17..1546 | 7650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24783655..24784362 | 17..724 | 3540 | 100 | Plus |
| 2R | 25286936 | 2R | 24784798..24785260 | 995..1457 | 2315 | 100 | Plus |
| 2R | 25286936 | 2R | 24784417..24784581 | 724..888 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 24784634..24784743 | 888..997 | 550 | 100 | Plus |
| 2R | 25286936 | 2R | 24785311..24785400 | 1457..1546 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:40:44 has no hits.
BS25163.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:35 Download gff for
BS25163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3589-RA | 84..1612 | 17..1545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:42 Download gff for
BS25163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3589-RA | 101..1629 | 17..1545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:18 Download gff for
BS25163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3589-RA | 101..1629 | 17..1545 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:18 Download gff for
BS25163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24783655..24784361 | 17..723 | 100 | -> | Plus |
| 2R | 24784417..24784580 | 724..887 | 100 | -> | Plus |
| 2R | 24784634..24784743 | 888..997 | 100 | -> | Plus |
| 2R | 24784801..24785260 | 998..1457 | 100 | -> | Plus |
| 2R | 24785312..24785399 | 1458..1545 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:42 Download gff for
BS25163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20672835..20672922 | 1458..1545 | 100 | | Plus |
| arm_2R | 20671178..20671884 | 17..723 | 100 | -> | Plus |
| arm_2R | 20671940..20672103 | 724..887 | 100 | -> | Plus |
| arm_2R | 20672157..20672266 | 888..997 | 100 | -> | Plus |
| arm_2R | 20672324..20672783 | 998..1457 | 100 | -> | Plus |
BS25163.pep Sequence
Translation from 16 to 1545
> BS25163.pep
MLLKIRHALLEVTSPPAAKQSAIIINNELIISSGSILQPHLAVDGDKGAQ
NKAIVARLQRGQLLDVQNEEQEEDAQIRSLHFVATFDPQQRRPRPIAAPG
SRQPHILSRFTAHPLYVFCANEVCRNLHHILLTADSGDAGEVLRSSFVVL
GLRKPEKEKSFKRFLAHIANYLRYLQPMHTLDDVLVMCSPFGLENFYKTI
SIGKVSNVMGRSGCLFAISNALPLGCEGSAVFNNKLRLVGIVICTSFQRH
HENVNLTLAANFGYLLRNFMEQLGMSTTAFQLSREPSSFAWERTIVVIES
AGQQGTGTFIRVHNKRFILTCAHVVGQNIETVNCRAADREFQSEVIWCNP
DSDKPFDLALLTAPQDVPEQCCVRLARSPATVGQMVYNAGFPYYVNFSFR
HDFNPSIFQGRVIKCDTGAIMSDGSVQAGQSGGPMFDQNGCILGVCVSNI
KLDDVVYPNINTAIPICDIRNTLQQFARTNDLNVLSNLVASPDVHRVWSL
EMPPIRSKL*
BS25163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3589-PA | 509 | CG3589-PA | 1..509 | 1..509 | 2653 | 100 | Plus |
