BS25166.complete Sequence
620 bp assembled on 2011-06-27
GenBank Submission: KX802962
> BS25166.complete
GAAGTTATCAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGA
AGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAG
GAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTG
GCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGC
TGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTG
CTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCT
CGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGC
AGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGC
GTCCTGATCCGTCAGCGTCACATTCGTGTCCGCAAGCAGGTGGTCAACAT
CCCGTCGTTCGTCGTGCGCCTGGACTCCCAGAAGCACATCGACTTCTCCC
TGAAGTCGCCCTTCGGCGGCGGCCGTCCCGGTCGCGTCAAGAGGAAGAAC
CTGAAGAAGAACCAGGGCGGTGGCGGTGGAGCTGCTGAAGAGGAGGAGGA
CTAAAAGCTTTCTAGACCAT
BS25166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS9-RE | 588 | CG3395-PE | 1..588 | 17..604 | 2940 | 100 | Plus |
| RpS9-RD | 588 | CG3395-PD | 1..588 | 17..604 | 2940 | 100 | Plus |
| RpS9-RA | 588 | CG3395-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS9-RE | 803 | CG3395-RE | 27..615 | 16..604 | 2945 | 100 | Plus |
| RpS9-RD | 706 | CG3395-RD | 27..615 | 16..604 | 2945 | 100 | Plus |
| RpS9-RA | 734 | CG3395-RA | 55..643 | 16..604 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9511052..9511279 | 243..16 | 1140 | 100 | Minus |
| 3L | 28110227 | 3L | 9510465..9510652 | 426..239 | 940 | 100 | Minus |
| 3L | 28110227 | 3L | 9509981..9510159 | 604..426 | 895 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:41:42 has no hits.
BS25166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:36 Download gff for
BS25166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS9-RD | 28..613 | 17..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:08 Download gff for
BS25166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS9-RA | 56..641 | 17..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:41 Download gff for
BS25166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS9-RA | 56..641 | 17..602 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:41 Download gff for
BS25166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9509983..9510158 | 427..602 | 100 | <- | Minus |
| 3L | 9510465..9510651 | 240..426 | 100 | <- | Minus |
| 3L | 9511056..9511278 | 17..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:08 Download gff for
BS25166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9503083..9503258 | 427..602 | 100 | <- | Minus |
| arm_3L | 9503565..9503751 | 240..426 | 100 | <- | Minus |
| arm_3L | 9504156..9504378 | 17..239 | 100 | | Minus |
BS25166.pep Sequence
Translation from 16 to 603
> BS25166.pep
MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYA
LAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLG
LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVV
RLDSQKHIDFSLKSPFGGGRPGRVKRKNLKKNQGGGGGAAEEEED*
BS25166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS9-PE | 195 | CG3395-PE | 1..195 | 1..195 | 985 | 100 | Plus |
| RpS9-PD | 195 | CG3395-PD | 1..195 | 1..195 | 985 | 100 | Plus |
| RpS9-PA | 195 | CG3395-PA | 1..195 | 1..195 | 985 | 100 | Plus |
| RpS9-PB | 137 | CG3395-PB | 1..137 | 1..137 | 685 | 100 | Plus |
