BS25172.complete Sequence
1661 bp assembled on 2011-06-28
GenBank Submission: KX801044
> BS25172.complete
GAAGTTATCAGTCGACATGAATTTTACACGGACTAATTGCTCGCCGCTGA
GTAAAAACCCAGTGGTGCAGCGCAGCCTGGACTTGCGATTGCAGGGCGCC
CAAGCGCGGCATTACCTCAAGTGGTGCTCCATAAATGTGGTGCTGCTGTC
GCTACTCCTCTTCGACCTCTGGCAGGCATGTCGGTCCGCCTACAGGACCT
ACTGGTTCCTGGCGGAGTGCACCATTACGACCCTGATTGGCCTAAGTGCA
CTCGCCTGCTTCGGCAAGTATTTGTGGTTATGGTTTGGTGGTGACCAAGT
TACGGGTAGCGATATCCAAAAGTGGCTGCTTGATGGCAAGGCAGAGAACT
CTTTTCGTACAGTTTGCTCCCGAGCCGTGATGAAACCACGCAGCTACGAA
CCGGATAGCGATATAGAGGACGACATACCCATCATCAACTGGCACTCCTC
CTTCGAGGACTCCTGCTGGGGCTCGCAATCCATGCGCCGCAGCCCCAGTC
CCACAAGGACGCCGCAGCAGACGAAACAAAACACCTCTTACAACTCCTCG
ATGGTTCGAAACAACTCGCTGAATGCCAGCAATCTGAGCAACGAGTCTAC
CTATATGTCCCCGTATGCGGAGGTGCGACGCGATGACTTCATGACCGATA
CACGAAAGTTGACCAGTCTAATGAAGCAGGCGGATCGGGAGCGCAGCATG
ATGGACAGCTCGGATACACCCAATGTGCAGAGCATGGGATCGGCCAACTC
CTTCTGGAACTACTGCAACAATGCGGCCTATATGCTCAAGACCACCATCT
ATCAACTATCGCCACCTCCGGCTGTTTCTACGGAAAATGCTCCCACCTCG
ATTGAGGAGTTTGGCGGTATTCAGTTTAGGGACAGCAATTCGGAGGTCAT
CAAGCGCATATCCACGGACAAACTGTCGCAATATGTGGCCAACCTAAGAT
TTTGGATTTCTACGACCATACTTCAGCGTTTGGTCAAAGAGATCAATTAT
GTGGACGATGTTTTCCGCCAGCGAGCTCTGATTGACATTAAAATTGGATC
TGTGAGTGTAGAGAGATTACGCAAAACAGCCGAGAACCAGCAGTTCGTGC
AGACGTGTGCGCCCATGTTGCCCATGCTCTTACCTTTCCTGGACACCTTC
AGCAACCAGGAATACCTGGTGCAGCGCATCAAGGAGCTTGCGCAGGGCTC
TTGCATAGCTGACTACCGCTGGTACTCGGGCAAAACACACAACGGTCAGC
AGCGGGACGAGCATTTGCCCACCGATGCAGCTATAATATTCCATTTATTT
TGCGTGTACTTGGATAGCCAGTTGATGCCGTTGCCGCAGGGCGGCGGACG
ACCCTTTCACTCCCGCTACGTGTTAATTCGCGACGAGAAGAGCTCGACCA
AGGACGTGGTGAACGCAGTTCACAACAAGGCCCACTGCGCCATTTTAAGT
ACCGGCAACCCACTTAACCCTAAATTTAACTTTATCAGCGACAAAGAACT
ACACAACTGCGTCTACGATAGGAATAACCTGTTCTACGTTATCATACAGT
TCCTAATTTATATGCGACAGCACCAGGACTCTGCTCTGGAGTGCGTAAAT
CTTGGCAAGAGTGGTATCAACATCATGTGCGTCATCGAAGACTGAAAGCT
TTCTAGACCAT
BS25172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6479-RA | 1629 | CG6479-PA | 1..1629 | 17..1645 | 8130 | 99.9 | Plus |
| CG6479-RB | 1617 | CG6479-PB | 11..1617 | 39..1645 | 8020 | 99.9 | Plus |
| CG6479-RC | 1611 | CG6479-PC | 1..1611 | 17..1645 | 7825 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6479-RA | 1861 | CG6479-RA | 84..1713 | 17..1646 | 8135 | 99.9 | Plus |
| CG6479-RB | 1791 | CG6479-RB | 36..1643 | 39..1646 | 8025 | 99.9 | Plus |
| CG6479-RC | 1843 | CG6479-RC | 84..1695 | 17..1646 | 7830 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17338129..17338738 | 952..343 | 3050 | 100 | Minus |
| 3L | 28110227 | 3L | 17337320..17337683 | 1646..1283 | 1805 | 99.7 | Minus |
| 3L | 28110227 | 3L | 17337743..17338072 | 1282..953 | 1650 | 100 | Minus |
| 3L | 28110227 | 3L | 17338796..17339101 | 344..39 | 1530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:28:49 has no hits.
BS25172.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 16:06:16 Download gff for
BS25172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RA | 80..1707 | 17..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:58 Download gff for
BS25172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RA | 84..1711 | 17..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:08 Download gff for
BS25172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6479-RA | 84..1711 | 17..1644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:08 Download gff for
BS25172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17338796..17339100 | 40..344 | 100 | <- | Minus |
| 3L | 17339157..17339179 | 17..39 | 100 | | Minus |
| 3L | 17337322..17337683 | 1283..1644 | 99 | <- | Minus |
| 3L | 17337743..17338072 | 953..1282 | 100 | <- | Minus |
| 3L | 17338129..17338736 | 345..952 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:58 Download gff for
BS25172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17330422..17330783 | 1283..1644 | 99 | <- | Minus |
| arm_3L | 17330843..17331172 | 953..1282 | 100 | <- | Minus |
| arm_3L | 17331229..17331836 | 345..952 | 100 | <- | Minus |
| arm_3L | 17331896..17332200 | 40..344 | 100 | <- | Minus |
| arm_3L | 17332257..17332279 | 17..39 | 100 | | Minus |
BS25172.pep Sequence
Translation from 16 to 1644
> BS25172.pep
MNFTRTNCSPLSKNPVVQRSLDLRLQGAQARHYLKWCSINVVLLSLLLFD
LWQACRSAYRTYWFLAECTITTLIGLSALACFGKYLWLWFGGDQVTGSDI
QKWLLDGKAENSFRTVCSRAVMKPRSYEPDSDIEDDIPIINWHSSFEDSC
WGSQSMRRSPSPTRTPQQTKQNTSYNSSMVRNNSLNASNLSNESTYMSPY
AEVRRDDFMTDTRKLTSLMKQADRERSMMDSSDTPNVQSMGSANSFWNYC
NNAAYMLKTTIYQLSPPPAVSTENAPTSIEEFGGIQFRDSNSEVIKRIST
DKLSQYVANLRFWISTTILQRLVKEINYVDDVFRQRALIDIKIGSVSVER
LRKTAENQQFVQTCAPMLPMLLPFLDTFSNQEYLVQRIKELAQGSCIADY
RWYSGKTHNGQQRDEHLPTDAAIIFHLFCVYLDSQLMPLPQGGGRPFHSR
YVLIRDEKSSTKDVVNAVHNKAHCAILSTGNPLNPKFNFISDKELHNCVY
DRNNLFYVIIQFLIYMRQHQDSALECVNLGKSGINIMCVIED*
BS25172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6479-PA | 542 | CG6479-PA | 1..542 | 1..542 | 2870 | 100 | Plus |
| CG6479-PB | 538 | CG6479-PB | 5..538 | 9..542 | 2823 | 100 | Plus |
| CG6479-PC | 536 | CG6479-PC | 1..536 | 1..542 | 2822 | 98.9 | Plus |
