BS25173.complete Sequence
3341 bp assembled on 2011-08-05
GenBank Submission: KX801307
> BS25173.complete
GAAGTTATCAGTCGACATGGACTACGACCTTTTTCAGTCGGATGACGAGG
AGATCCTGGCTACCTTCATACAGGCGACACAGAAGCAGGAAACCCTGAGC
GCGCAAATAGACGTGGACGATAGCGAAGAGGACCTAGTCGACGGTCTACA
CTTGCCCGAGTTCAACTGCAGTGGCCGAGACACTCTGAAGAGCCAACTGT
GCGAGGGAGGCTTTCTGGGGAATGGCTACGCCCAATTGGATCCGCCCCGC
TCTCGCCTGGATTATCTCTGTTTTGACTTTGCTCCGGCTCAATTAGCGGT
TGGCGCGGTAAGAAACTACCTGTACGGCGAGGCCTGTAAGAATGTGCAGA
AGCTGTTAACCGTCGTGATGGGCCAGCAACACCTGCAGGCCACGGCCGCC
TCTATGAACTCTGGTTGGTATAGAGTGCGCCAGCAGGTCACACACTTCTA
CCATCTGATGCTGCTCCTACGAGGCAATGAGCTGCTGCCTTCACATTTTC
TTGATGGGTTTCGACAATTGCTCAACGATCAGCTGGATGCGGATACCTGG
AAGGTTTTGTATTTTGCGGAGCACAACAAGGGAAACGACTGCCAGGCGCC
GGCGTATCACCTGTATCACGGCGTACTGGAGTGGCGTTTTCTGGACCTGC
ATATACTGTACGCCTCTGGGAATGATCAAGCGTTCCTAGGGCAGCTGGAG
CGCACACTCGACGATCTGATCGTTTGTGCTGGACATCACTACCGCAGCAA
ACATCGCTCGGAGCTCATCCATTCCTCGCCGTTCATGTGTCGCTGCAACA
AGGAGCTGTGGCTGCTGCTGAAACGTCTTATTCCCAAATGGCTGGGAGAA
CGGGAGCTAGACTTTTGGACTCTATTCCACAAGGCCATGCAGAGGCACAA
GTCACTCCACTTCCAGGGTGAGAGCAATGCAATTTCTCTGGCATACCACG
AACTCTATTCCTGGTTGAGGCTAGGACTGGCCCGCTTGGACGAATACAAC
AGTGAGGGTTGGTACCAGCCGGATCACTCGCCGCTCACTGCGGCACCAGA
AAGCTTCCAAACTGCCAGTCTGCTTAAGCAATTTCTGGCGAGCCAGCCGG
ACGAACAGCAGCGGCGGGTCTACCTAATTCAACTCTCTCCCCTTCAACTG
CAGCTGGGCAAGCCGGATACTGATGTCCTGTGCCAGCTGTGGGAGTACTT
TCACCGATCCCTCAACTGCAATTTTAGTGTGGGAACTGAGCTAGATCAGC
TGCCGCTTACCTGTTCCAATGGGTCGGCCTACGTCGATCGCTACAACAAA
CTGCTGTCTAAGTCGCATATAGAAGATTTGAATCTGAGCAGTTTCACCAT
GTACGCGTGGATGCTGGGCAAAACCTTGAAGCTTTTACCATCGCAGGGCA
GAAGCAACCAACGTCAGAAACTACTCGGCCGCATATTCAGCAAGTTTAGT
GCCGCGAAACTTTTGGCTCTGAATGAGCCTGGTATTCACCATGTGATCGA
GCTGTTTCTGTGCCTGCTGCTCTGCCACGAAGATCTCAGCGAGTTGGCGC
CCAAGCTGCGCGAAATGTTGCTCTGCCTGGCCCTGGAAAAACTGCCTCCG
GTGCGAAGGATTCTCGTGGCCAAGGGACACATGGCCCTGCTGCTTCTGCA
TGCCCAGCATCGCCTATCTATGGATGACTATGTGAGCAAGCTGCTCAACC
AGTTGGCCACCATTCGCAATGATGCAGAGGTGGGCGCCATTTATGTGGGC
AGCCTTCAAGCCATCTTTAATCTGGCGGATGACTTCAACCGCGGCGAGCA
GCAGCTTCTCGGGCCATGGCTGGCACATTACGTCGAAAAGTGTGGGCAGG
CATCGCAGGATCGCGTATGGCAGACGCTTCACAATTTAATCCTCCGTCTC
AGCGAGCGGAGAGCTGTGGCTGGCAATGCGAGTGGCATCAAGGAGGCACT
TCAACAGCACATAATGCCACTGGTGAGGACCCAATACGTTAGTAGCCATA
GCTCATGGCTTCCAAAGCTAGCGGCTAACTTCATCGCCCTGGAGAATAAT
GGGGACAAACTGCTACTGGGCTTCCTGCAGGGACCAGAACCCATCAATAT
GGCTGCTTCTGCTCAGTTGTTGCTCCAGGTGTTGGAAGACGGAGGGCGAC
CTGCCAGCTCCACCATTCTTCAGGTCTGGGTGAAGTCTCTGGTCCTCCTA
AACGCACAACACGAATCTGTATTGGCTTTAATGCCCCATGTCACACAGCT
AGAGGAGTTCCGACTTCTGGCCATTGATCCCACCTCTTTGGAGGGCGGGC
GCGAGCCTCTCTGCGCCTTCTTTGGAGCTCTGGGAAGGCGTGCCCAGCAA
GAGGAGGCTGCTGCCCACGTCCGTATGCAGTTGAGCCACAAACTGCATGC
CTATGTAAATCATTTCGAGCTATGGCTACCCCCGGATCGAAGCCGATCGG
AACTCGGTTCCCGGTTCTACAGCTTCCTAGCCATTGTCATCTATAATTGT
TCCACTCTAGCGTACGTGCGATCCAAGCCGAGCTGCTTCTTCCACCTGGC
CATGGTGCGGTTCCTGCTCACCACGCAGTTGCAGGCAGGAGTGCCGCCCG
AAGGTCGCCTTCCACAAGTGGTTCACAAGATTTTCCCAGTGTTGCTGCAA
GGCATTGGTCGACTGCCTTACCGCACGGACGCATACGTGGCCAAGACTTT
GGAGCAACTAGTTCAGCACTGGACGCCGCACTTTAGCTTCTCATCCAACG
CCAAGCTGGTGGCCCGTCCATATGCCACCCTCCTCCAGGCGGATGTAGAT
GGAGAGCTGGCGCAGTTTGTGCTTCAGCTCCTCGTTACCCAGTTTTTGGT
GGTCCAGCGGCGGAGGGCAGGACAGCATGCGGGCTTGGTGATCACTATAA
TGCAGCAACTGATAGAGAGCACTGGCAAAGAGCAGGAAGAACAGCTGCTA
ACCGTTTTGCGCGGCGTGCACATCCCGCTGCTGGAACACGTAATGTTCGT
GGACGAAGTGGACCTCAGTCGCAACCAAGTGTTTGGACTTTATAAAGTGC
TTATATCGCACGATGCCTACAAGCGATCACAGGCGGTCAGGGATATGTGC
TCCAATCACTTGCGATCCCTCGCCGAAAAGCACCTGGCCCACTGCACTTA
CTTTTACTTCCAGATGCTGATCAACCTGGCAGAGCTGGCGCCGGATCTAG
TGGCTCCCATCCTATCCTTTATAAGGGAGCAGGCAGAGCAGGTGGAGCTA
AAACGCGGCGCTGGAGAAGATGTGGGCATACGCAAGTGCTTGCAGCGACT
CCAAAAGGTCTTGAGCAGGGTTTAGAAGCTTTCTAGACCAT
BS25173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14803-RA | 3309 | CG14803-PA | 1..3309 | 17..3325 | 16545 | 100 | Plus |
| CG14803-RB | 3294 | CG14803-PB | 1..3294 | 17..3325 | 16285 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14803-RA | 3419 | CG14803-RA | 53..3362 | 16..3325 | 16550 | 100 | Plus |
| CG14803-RB | 3404 | CG14803-RB | 53..3347 | 16..3325 | 16290 | 99.5 | Plus |
| Pex5-RA | 2158 | CG14815-RA | 1..140 | 155..16 | 700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1869943..1872351 | 917..3325 | 12045 | 100 | Plus |
| X | 23542271 | X | 1869297..1869887 | 336..926 | 2940 | 99.8 | Plus |
| X | 23542271 | X | 1868922..1869242 | 16..336 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:11:50 has no hits.
BS25173.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 09:59:32 Download gff for
BS25173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14803-RA | 136..3444 | 17..3325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:44 Download gff for
BS25173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14803-RA | 54..3362 | 17..3325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:30 Download gff for
BS25173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14803-RA | 54..3362 | 17..3325 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:30 Download gff for
BS25173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1868923..1869242 | 17..336 | 100 | -> | Plus |
| X | 1869298..1869878 | 337..917 | 100 | -> | Plus |
| X | 1869944..1872351 | 918..3325 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:44 Download gff for
BS25173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1762956..1763275 | 17..336 | 100 | -> | Plus |
| arm_X | 1763331..1763911 | 337..917 | 100 | -> | Plus |
| arm_X | 1763977..1766384 | 918..3325 | 100 | | Plus |
BS25173.pep Sequence
Translation from 16 to 3324
> BS25173.pep
MDYDLFQSDDEEILATFIQATQKQETLSAQIDVDDSEEDLVDGLHLPEFN
CSGRDTLKSQLCEGGFLGNGYAQLDPPRSRLDYLCFDFAPAQLAVGAVRN
YLYGEACKNVQKLLTVVMGQQHLQATAASMNSGWYRVRQQVTHFYHLMLL
LRGNELLPSHFLDGFRQLLNDQLDADTWKVLYFAEHNKGNDCQAPAYHLY
HGVLEWRFLDLHILYASGNDQAFLGQLERTLDDLIVCAGHHYRSKHRSEL
IHSSPFMCRCNKELWLLLKRLIPKWLGERELDFWTLFHKAMQRHKSLHFQ
GESNAISLAYHELYSWLRLGLARLDEYNSEGWYQPDHSPLTAAPESFQTA
SLLKQFLASQPDEQQRRVYLIQLSPLQLQLGKPDTDVLCQLWEYFHRSLN
CNFSVGTELDQLPLTCSNGSAYVDRYNKLLSKSHIEDLNLSSFTMYAWML
GKTLKLLPSQGRSNQRQKLLGRIFSKFSAAKLLALNEPGIHHVIELFLCL
LLCHEDLSELAPKLREMLLCLALEKLPPVRRILVAKGHMALLLLHAQHRL
SMDDYVSKLLNQLATIRNDAEVGAIYVGSLQAIFNLADDFNRGEQQLLGP
WLAHYVEKCGQASQDRVWQTLHNLILRLSERRAVAGNASGIKEALQQHIM
PLVRTQYVSSHSSWLPKLAANFIALENNGDKLLLGFLQGPEPINMAASAQ
LLLQVLEDGGRPASSTILQVWVKSLVLLNAQHESVLALMPHVTQLEEFRL
LAIDPTSLEGGREPLCAFFGALGRRAQQEEAAAHVRMQLSHKLHAYVNHF
ELWLPPDRSRSELGSRFYSFLAIVIYNCSTLAYVRSKPSCFFHLAMVRFL
LTTQLQAGVPPEGRLPQVVHKIFPVLLQGIGRLPYRTDAYVAKTLEQLVQ
HWTPHFSFSSNAKLVARPYATLLQADVDGELAQFVLQLLVTQFLVVQRRR
AGQHAGLVITIMQQLIESTGKEQEEQLLTVLRGVHIPLLEHVMFVDEVDL
SRNQVFGLYKVLISHDAYKRSQAVRDMCSNHLRSLAEKHLAHCTYFYFQM
LINLAELAPDLVAPILSFIREQAEQVELKRGAGEDVGIRKCLQRLQKVLS
RV*
BS25173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14803-PA | 1102 | CG14803-PA | 1..1102 | 1..1102 | 5737 | 100 | Plus |
| CG14803-PB | 1097 | CG14803-PB | 1..1097 | 1..1102 | 5690 | 99.5 | Plus |
