BS25174.complete Sequence
4085 bp assembled on 2011-08-05
GenBank Submission: KX805137
> BS25174.complete
GAAGTTATCAGTCGACATGCCGAGCTTCTACCTATTCGCCGCCAGCAGTG
AAGGGCGCGTCTACACGCTGTCCACCAACTCCGGAGCGTGGCGCGAACTT
CCCTATCTGGGATTGGAGTTCAAGAAGATCTGCGCTGTGCCCAACTTTTT
GTGGGCCATTGGCGGCGACCGCCAGGTGTACGTTCATGTGCACGGTCTGG
ACGTGCCCATTCGGATTCGGGAGGAGTCGTACGAGAACGAGCGCTGGCTG
CCCATCGAAGGATTTTCGAAGACGCTGCTGCCCACTGATCGGTACAGATA
TTCCTCCGCCGATGGCAGTGTGGAGCGTGGTGTGGACAAAATCCGACTGC
CCTCGATGGCGTGGCAATGGGACGGCGACTGGCACCTGGACTTAGAGCTC
GATGGACAGCCGCTGACCGAGGATGGCTGGATGTACGCCCTGGACTTTCC
GGCCACGTACTCGGCAAAGAAGTCTTGGAACTCGTATGTGCGACGACGCA
AGTGGGTGAGATATAGGAGGTATGCAGCCTTGAATAGCTGGTGCGCGGTG
GCACCACTACACAAGGATCCCACGCAGGAGCCCTTCATAGACGTGGCTAT
AGGCGGCACTTGTGTTCCCAACGCTCCTGCCGGCACTTTGTGTGTCTGGG
CCATTACCGCCCATGGCAGGGCTATGTTTCGCACGGGGGTGTCCAAAACG
GCGCCCGAGGGTCTTCGCTGGACAGCTGTACCCACGCCCACGGGCAGTGA
ACTCGCGCAGATCAGCGTGGGACCCACAGGATTGGTATGGGCGGTACTCC
ATAACGGCCGAGTTATCGTACGTACTGGTGTAACCAGAGACAACCTAGTC
GGTGACTCGTGGTTGGATGTCAAAACCCCCGTGGCCGCCAGTAGCTTGCG
CATTGTTCACGTTTCCGTGGGCACCGATGCTGTGTGGTGTGTAACCAATG
ATCATCACGCCTGGTTCAGGAGAGGCGTCAAGGGTGAAGCAGCGGGCATA
AGCGAGGATTCGGCCATTGGCAAGGGCTGGGTGGAAATGGTGGGAAACAT
TTCAATGGTCTCTGTGGCGGCCAACGATCAGGTCTTTGCCATTGGAGCCG
CTGACCGTTGTTTGTACCACCGCTCTGGGGTGACCTCTGCCGACCCTACT
GGCAAAAAATGGCGTTTAATTCAATGTCCCATGCAAATCAGCCGCACTTC
TAGCTCTCTATCCATAGTCTCTCGTAAAAGCGGCGGAAGTAGTTCAACGC
CAGGCTCAAAGCACCAGAGCTTCTCCAATTTGTACTCCAAGGAGAAGGAG
AAGGGTGTGGTAGAGACGTGTGCAGTTATAGAAACTGTGCTCAACAGCTC
TACGGGCTCCTGCTCTAGTAATGGCGGTCCACCTGGTCTTCTTAAGAACG
AACGTTGGAAACTCAGTGCCGATTCACCTCCGACAATTGGAAGTCTGAAT
CTCAACGATCGCCACAAGCAGAGAACGGCGGCGCTTCGCGAAACTTCACA
TGCTTCCAGTGCTCCCGCAGCGGATGTGGTGGAGGTGGTAACTGGCAAGT
TTGAGACCCAGCTGAGGAATCCAAGAGCTTGGTCTCCCGTCCGAAGTGTT
GGGTCCGTCGTGGGCACTGAAGCGCATCCAGAGAGCGATTCGACCGTGTT
TGAGTCGGACTCCACGCACCATGGATCGGATGTGTTTCTGGGAGAAGATG
ACGACCATACGGGATCACAATTTTGGACAGAATGCGGGATACTATGGAGC
TGCGTAGCTTCAGGTGCTGTGACTGTGGATGCCAGCAACATGCCCAATTG
GTTTAACGAGCAGACGAGCGACAGTAAAGTGGACGTGAATGCCAATTGGC
GAAAGGATATTGTGAACAAGTTGCAGCGACGTCAGGAGAAACTGGCCAAG
CTTCAGACTGTGGCCAAGTTCGAGAAGGCAGTGGAGCTTTCTTCGTGGGT
CAAATCGGCGGATGCGCGCTATCAGCGACCTGGAGGCGAGTTTGAGGATT
GTATCATCGAACTTGAGTGGGTAAGCAGTGGCAGTGGCACTGACACAAAT
AGTAGTGAAAACTCGCGATCCGGGGACTCTGGAACTTTTACGGTACTTAG
TCCGGATGGAGCCGCCACGAAGATTCAGTTCCCGTTGTCAGACATCACCT
GTGTTCAGTGCTGCAGTGAAGCCGGAGCACCGCGGATCGCTATTCATGCT
CCTCATCTTCCCGTAAACTGTTCGCCCGTTAAGCTACAGTTCTCCAGTGA
CTCGGAAATGGAGGACTGGTTGTCCCACCTGTCGTCAGTCTGTAGCCAGA
TCAACACTATGGTGGGAAAACCGGCTGGCAATGCGATCTGGATAACCAGC
GAGTTGGGCGATGTCTTTGTGTTTGATCCCGCCAACATGAAGGCACATCA
GACAAGTGAACCCAGCGAGGGATACGTGGAGAAGATGGATGTTTCCACTT
GCGAAACTCCATACTACAATACTCTTTACAATGGAATGCCATGTGGTACT
GAGCTAGAGATATCTGGCTGTGTGTACGATGACGCTGATCAGATTCGTTT
CGACTTGCAGTCGCATTCTGCAGTAAAAGTTCAGCCTCATCGCGTGGAGA
AGCATCGGGTCATTGCTCTGCACCTGAATCCCCGTTTCAACGAACGCACC
ACGGTGCTCAACTCGATGAAGGAGTCCGAATGGCTGGACGAGATTCGCAA
TGACAAAATGGCCTTTGCTCCCGGAGCAACTTTTTCGTTGAAAATAAGGG
CTCTGCAAGATCACTACTTGATCATCGTGAACAATGCCGTATATACCGAC
TACAAGTACCGCATCGATCCGGAAAGCGTGACGCGGCTTTATGTGAGTGG
CCGTATTAAGCTTTTCAATGTACTCTACCGCTGCCCCTCCCTAATTGTCT
CAATGGAGCGCATGCACTGGCGCCAAATGGGCGGTCACATTAAGAGGATT
TTCAACAGCGGCGTGGATGTGGTGTGGGGCATATCCTGTGACAACACTGG
CTGGGTTTACAACGGAGGCTGGGGAGGAATGTTCCTAAAGGGCTTGGAGG
GGTCCGGCAAAATTAACCCAATGATTGACACACACACCTACTATGTGTAC
GAAAATCAACGTTGGAATCCAATCAGTGGTTTCACGGCGAAGAGCCTGCC
GACGGATCGGCACATGTGGAGCGATGCTACTGGGCGGCAGAAGCGGAGCA
AGGAGCACACCAAGCTGCTGTCTACGCACTGCGAATGGATCTCCGATTGG
GCCATTGACTACAACATTCCTGGGGGCGCGGACAAGGAGGGCTGGCAATA
CGCCATCGACTTCCCCGCCAACTACCATGCTCACAAAAAACTCACAGATT
GCGTGCGTCGACGAAGATGGATGAAGCGATGTCGTCTTAGCAGCAGCGGA
CCATGGCAGGAGCTTAGTCAGTCCAAAATCCTTGATGCTGCCCTGCAGGT
ATTGGATGAAGATGTGGATCACAGCTGTTCGGGTGAGAGAAACACAGCAG
TGGCTGCCTGGGCGATTGCCTCCAATGGTGATGTCCTCATCCGGCATGGT
GTATGCAGCTTAAACCCTCGTGGCGATGCCTGGGAGCACATAACCAGCGA
CCAGCCGTTAGTTGGGATCAGCGTGGGGCCCACAGGTCAGGTGTGGACTG
TGGCGCGCAACGGCATGGTGTTCTTCCGGTATGGCATCAGCAGGCAGAAT
CCGTGCGGCGATGCCTGGCAACAAGTGGAGGCACCCGCGGGTGTGACCTT
TAAAGCGATAAGCGTGGGTCGGGCTGGGATTTGGGCGCTGGACAACCAGC
AACGTTTGGCTGTGCGTAAGGAGATTTCGAGGACTTTCCCTGAGGGCTCC
CACTGGCAGTTTCTGCCCAATGCCGCCAATGTGCCACCGCACACGGATCA
GCATTGTGGCTTCCGCTCGGTGTCCGTGGGCTCCGAGGTGTGGGCCATCT
CCCTCAATGGTATCATTTGCAGGCGCTGCGGAATTACAGAGGAAAATCCT
GCAGGCGTAGGATGGAACCTTGGCATTGCGGGCCAATGGCAAAATGTCTC
TGTCGAAGGATATATGTGAAAGCTTTCTAGACCAT
BS25174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex23-RA | 4053 | CG32226-PA | 1..4053 | 17..4069 | 20265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex23-RA | 4504 | CG32226-RA | 121..4173 | 17..4069 | 20265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20299498..20300903 | 2484..1079 | 7030 | 100 | Minus |
| 3L | 28110227 | 3L | 20300955..20302021 | 1083..17 | 5335 | 100 | Minus |
| 3L | 28110227 | 3L | 20298200..20298905 | 3452..2747 | 3530 | 100 | Minus |
| 3L | 28110227 | 3L | 20297563..20298147 | 4031..3447 | 2925 | 100 | Minus |
| 3L | 28110227 | 3L | 20298964..20299229 | 2749..2484 | 1330 | 100 | Minus |
| 3L | 28110227 | 3L | 20297460..20297499 | 4069..4030 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:12:27 has no hits.
BS25174.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 09:59:33 Download gff for
BS25174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32226-RA | 82..4133 | 17..4068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:01 Download gff for
BS25174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex23-RA | 121..4172 | 17..4068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:47 Download gff for
BS25174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex23-RA | 121..4172 | 17..4068 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:47 Download gff for
BS25174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20297461..20297498 | 4031..4068 | 100 | <- | Minus |
| 3L | 20297564..20298145 | 3449..4030 | 100 | <- | Minus |
| 3L | 20298204..20298903 | 2749..3448 | 100 | <- | Minus |
| 3L | 20298965..20299228 | 2485..2748 | 100 | <- | Minus |
| 3L | 20299498..20300900 | 1082..2484 | 100 | <- | Minus |
| 3L | 20300957..20302021 | 17..1081 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:01 Download gff for
BS25174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20290561..20290598 | 4031..4068 | 100 | <- | Minus |
| arm_3L | 20290664..20291245 | 3449..4030 | 100 | <- | Minus |
| arm_3L | 20291304..20292003 | 2749..3448 | 100 | <- | Minus |
| arm_3L | 20292065..20292328 | 2485..2748 | 100 | <- | Minus |
| arm_3L | 20292598..20294000 | 1082..2484 | 100 | <- | Minus |
| arm_3L | 20294057..20295121 | 17..1081 | 100 | | Minus |
BS25174.pep Sequence
Translation from 16 to 4068
> BS25174.pep
MPSFYLFAASSEGRVYTLSTNSGAWRELPYLGLEFKKICAVPNFLWAIGG
DRQVYVHVHGLDVPIRIREESYENERWLPIEGFSKTLLPTDRYRYSSADG
SVERGVDKIRLPSMAWQWDGDWHLDLELDGQPLTEDGWMYALDFPATYSA
KKSWNSYVRRRKWVRYRRYAALNSWCAVAPLHKDPTQEPFIDVAIGGTCV
PNAPAGTLCVWAITAHGRAMFRTGVSKTAPEGLRWTAVPTPTGSELAQIS
VGPTGLVWAVLHNGRVIVRTGVTRDNLVGDSWLDVKTPVAASSLRIVHVS
VGTDAVWCVTNDHHAWFRRGVKGEAAGISEDSAIGKGWVEMVGNISMVSV
AANDQVFAIGAADRCLYHRSGVTSADPTGKKWRLIQCPMQISRTSSSLSI
VSRKSGGSSSTPGSKHQSFSNLYSKEKEKGVVETCAVIETVLNSSTGSCS
SNGGPPGLLKNERWKLSADSPPTIGSLNLNDRHKQRTAALRETSHASSAP
AADVVEVVTGKFETQLRNPRAWSPVRSVGSVVGTEAHPESDSTVFESDST
HHGSDVFLGEDDDHTGSQFWTECGILWSCVASGAVTVDASNMPNWFNEQT
SDSKVDVNANWRKDIVNKLQRRQEKLAKLQTVAKFEKAVELSSWVKSADA
RYQRPGGEFEDCIIELEWVSSGSGTDTNSSENSRSGDSGTFTVLSPDGAA
TKIQFPLSDITCVQCCSEAGAPRIAIHAPHLPVNCSPVKLQFSSDSEMED
WLSHLSSVCSQINTMVGKPAGNAIWITSELGDVFVFDPANMKAHQTSEPS
EGYVEKMDVSTCETPYYNTLYNGMPCGTELEISGCVYDDADQIRFDLQSH
SAVKVQPHRVEKHRVIALHLNPRFNERTTVLNSMKESEWLDEIRNDKMAF
APGATFSLKIRALQDHYLIIVNNAVYTDYKYRIDPESVTRLYVSGRIKLF
NVLYRCPSLIVSMERMHWRQMGGHIKRIFNSGVDVVWGISCDNTGWVYNG
GWGGMFLKGLEGSGKINPMIDTHTYYVYENQRWNPISGFTAKSLPTDRHM
WSDATGRQKRSKEHTKLLSTHCEWISDWAIDYNIPGGADKEGWQYAIDFP
ANYHAHKKLTDCVRRRRWMKRCRLSSSGPWQELSQSKILDAALQVLDEDV
DHSCSGERNTAVAAWAIASNGDVLIRHGVCSLNPRGDAWEHITSDQPLVG
ISVGPTGQVWTVARNGMVFFRYGISRQNPCGDAWQQVEAPAGVTFKAISV
GRAGIWALDNQQRLAVRKEISRTFPEGSHWQFLPNAANVPPHTDQHCGFR
SVSVGSEVWAISLNGIICRRCGITEENPAGVGWNLGIAGQWQNVSVEGYM
*
BS25174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex23-PA | 1350 | CG32226-PA | 1..1350 | 1..1350 | 7271 | 100 | Plus |
| galectin-PF | 272 | CG11372-PF | 108..248 | 815..952 | 165 | 32.4 | Plus |
| galectin-PD | 401 | CG11372-PD | 237..377 | 815..952 | 165 | 32.4 | Plus |
| galectin-PB | 402 | CG11372-PB | 238..378 | 815..952 | 165 | 32.4 | Plus |
| galectin-PE | 419 | CG11372-PE | 255..395 | 815..952 | 165 | 32.4 | Plus |
