BS25176.complete Sequence
2147 bp assembled on 2011-07-20
GenBank Submission: KX801747
> BS25176.complete
GAAGTTATCAGTCGACATGACGCCAGAGAAATCGGTTATGGCCTACGTCA
ATCATTTGATTGTCAGCAATTTTTCATATTTCTGGGACGAGATCGATGGG
TATCTGTACTACCTGGGAGGCACTTTGGGAACATTAACCCTAGGAAGCCT
GGCAGCTAGTGTGGCATACTACTTTGCAACGAGGCCCGTTCCGGAACGAC
CGTTAGTGCCTCTGGAGAACCAATCGCCATTGCTAGAGGGTCCAGAACAA
ATACACGTCTCCAAGTTCTACAAGGAGTCGAAGAACGGCAAGTTCGTGTC
CTACATCACAGAGAATGTCCGCACCCTGTACCAGACGTTCCGCGAGGGCG
CCTACGCCTCCAACAATGGACCATGTCTTGGCTGGCGCGAGACCCTGACC
TCCCCCTACCAGTGGATCAACTACGACGAGGCCCTGCTGCGTGCCAAGAA
CTTTGGAGCCGGAATGCTGGCGCTAGGAGCCAGGCCAAAGCAGTTGATTG
GGATCTACTCGCAGAACCGCCCGGAATGGATCCTGTACGAGCAGGGCTGC
TACTCCTTCTCCTTGGTGGTGGTGCCGCTGTACGACACCCTGGGCCCCGA
TGCCTGCGCCTTCATCATACGCCAGACGGATATGCAGGTGGTGATTGTGG
AGGACGATGGCAAGGCGGCCATGCTGTTGGAGAAGGCGCCGCGCAGTCTG
AAGATCATAGTGGCTATCAAGCCCATCCGGCAGACGACCCTGGAGCGGGC
ACGCAGCCGAGGCATACAGATATTCTCATTTATCGATGTGGAGAAACTAG
GTGCCAAAGGCAACCATCCGGAGGTGCCGCCGACGGCGGAGGATCTTTGC
ACGGTGTGCTACACGTCCGGGACGACGGGCAATCCGAAGGGCGTGATGCT
CACCCACGGCAACGTGGTGGCCGGCGTCTGTTCTGTGATCCTGCAGATGG
GCGACCATCGCATCCGGGCGGGCGATGTGATGGTGTCATTCCTGCCCCTG
GCCCACATGTTCGAGCGTTGCTGCGAGAATGGAATGTACTATGTGGGCGG
CTGTGTGGGCTTCTATTCCGGCGACATCAAGGAATTAACCAATGACCTCA
AGATGCTGAAACCAACCGTAATGCCGGCAGTGCCTCGTCTTTTGAACCGC
GTCTACGACAAGATTCAGAATGATATCTCAGCGTCTGGACTGAAGAGGGG
TCTCTTCAATATGGCTATGCGAGCGAAGGAGAAGGAGATCGCCAGGGGTG
TCCTGCGGAGGAACGGCTGCTGGGACAAGTTGGTCTTCAAGAAGGTGCAT
CAGGCCTTTGGCGGAAATCTTCGTTTAATGGTCGTGGGCTCCGCCCCATT
GGCCGGAAATGTCCTGACCTTCATGCGCTGTGCTCTGGGCTGCCTGGTTC
TCGAGGGATATGGCCAAACGGAGTGCACGGGGGCCATTACCCTTACCGTT
CAGGGAGATCATGTGCCCAACCATGTGGGACCACCCGTGTCCTGCAATGC
TGTGAAACTGGTGGATGTGCCGGAGATGGAGTACTTTGCCAATCAAAATA
CTGGCGAGGTGTGTGTGCGCGGATCGAATGTGTTCCATGGTTACTATAAG
GATCCCGAAAAGACGGCGGAGGCCATCGATTCGGAGGGCTGGCATCATAC
GGGCGATGTGGGCATGTGGCTGCCAAATGGAACACTACGGATCATCGATC
GCCGCAAGCACATCTTCAAGCTTAGCCAGGGCGAGTACATAGTGCCCGAG
AAGATCGAGAATATCTACACGCTCAGTCAATACGTAAATCAAGTTTATGT
CTATGGAGAGAGCTTAAAGAGCTGCATTATCGCTGTTGTTGTACCTGATA
CCGATGTACTGAAGCAATGGGCCACGGAGAACAATGTACGCGGCACACTC
TCCGTCCTGTGCAATAATAAGAATGTCAAGGAACTGATCATGAACGACAT
GCTCAACTGGGGCAAGCAGAGTGGACTCAAGTCATTCGAACAGGTTAAAG
ATATCTATCTGCATCCGGATCCCTTCTCGGTGCAAAACGGACTGCTGACG
CCCACATTCAAAGCCAAGAGACCGCAGCTTAAGAGCTATTTTAAGCCCCA
GCTGGAGGATATGTATAAACACCTGGATTAAAAGCTTTCTAGACCAT
BS25176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3961-RC | 2115 | CG3961-PC | 1..2115 | 17..2131 | 10575 | 100 | Plus |
| CG3961-RA | 2115 | CG3961-PA | 1..2115 | 17..2131 | 10575 | 100 | Plus |
| CG3961-RD | 1965 | CG3961-PD | 71..1965 | 237..2131 | 9475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3961-RC | 3309 | CG3961-RC | 358..2473 | 17..2132 | 10580 | 100 | Plus |
| CG3961-RA | 3373 | CG3961-RA | 422..2537 | 17..2132 | 10580 | 100 | Plus |
| CG3961-RD | 2649 | CG3961-RD | 321..2216 | 237..2132 | 9480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18879802..18880981 | 1590..411 | 5900 | 100 | Minus |
| 3L | 28110227 | 3L | 18879511..18879740 | 1819..1590 | 1150 | 100 | Minus |
| 3L | 28110227 | 3L | 18879285..18879462 | 1995..1818 | 890 | 100 | Minus |
| 3L | 28110227 | 3L | 18881078..18881253 | 412..237 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 18887060..18887215 | 239..84 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 18879086..18879226 | 2132..1992 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 18887552..18887619 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy7 | 5486 | gypsy7 GYPSY7 5486bp | 4296..4410 | 1850..1734 | 147 | 61.9 | Minus |
BS25176.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-20 15:20:38 Download gff for
BS25176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RC | 357..2469 | 17..2129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:18 Download gff for
BS25176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RA | 422..2534 | 17..2129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:35 Download gff for
BS25176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RA | 422..2534 | 17..2129 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:35 Download gff for
BS25176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18879287..18879460 | 1820..1993 | 100 | <- | Minus |
| 3L | 18879511..18879739 | 1591..1819 | 100 | <- | Minus |
| 3L | 18879089..18879224 | 1994..2129 | 100 | <- | Minus |
| 3L | 18879802..18880979 | 413..1590 | 100 | <- | Minus |
| 3L | 18881078..18881251 | 239..412 | 100 | <- | Minus |
| 3L | 18887061..18887215 | 84..238 | 100 | <- | Minus |
| 3L | 18887553..18887619 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:18 Download gff for
BS25176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18872387..18872560 | 1820..1993 | 100 | <- | Minus |
| arm_3L | 18872611..18872839 | 1591..1819 | 100 | <- | Minus |
| arm_3L | 18872189..18872324 | 1994..2129 | 100 | <- | Minus |
| arm_3L | 18872902..18874079 | 413..1590 | 100 | <- | Minus |
| arm_3L | 18874178..18874351 | 239..412 | 100 | <- | Minus |
| arm_3L | 18880161..18880315 | 84..238 | 100 | <- | Minus |
| arm_3L | 18880653..18880719 | 17..83 | 100 | | Minus |
BS25176.pep Sequence
Translation from 16 to 2130
> BS25176.pep
MTPEKSVMAYVNHLIVSNFSYFWDEIDGYLYYLGGTLGTLTLGSLAASVA
YYFATRPVPERPLVPLENQSPLLEGPEQIHVSKFYKESKNGKFVSYITEN
VRTLYQTFREGAYASNNGPCLGWRETLTSPYQWINYDEALLRAKNFGAGM
LALGARPKQLIGIYSQNRPEWILYEQGCYSFSLVVVPLYDTLGPDACAFI
IRQTDMQVVIVEDDGKAAMLLEKAPRSLKIIVAIKPIRQTTLERARSRGI
QIFSFIDVEKLGAKGNHPEVPPTAEDLCTVCYTSGTTGNPKGVMLTHGNV
VAGVCSVILQMGDHRIRAGDVMVSFLPLAHMFERCCENGMYYVGGCVGFY
SGDIKELTNDLKMLKPTVMPAVPRLLNRVYDKIQNDISASGLKRGLFNMA
MRAKEKEIARGVLRRNGCWDKLVFKKVHQAFGGNLRLMVVGSAPLAGNVL
TFMRCALGCLVLEGYGQTECTGAITLTVQGDHVPNHVGPPVSCNAVKLVD
VPEMEYFANQNTGEVCVRGSNVFHGYYKDPEKTAEAIDSEGWHHTGDVGM
WLPNGTLRIIDRRKHIFKLSQGEYIVPEKIENIYTLSQYVNQVYVYGESL
KSCIIAVVVPDTDVLKQWATENNVRGTLSVLCNNKNVKELIMNDMLNWGK
QSGLKSFEQVKDIYLHPDPFSVQNGLLTPTFKAKRPQLKSYFKPQLEDMY
KHLD*
BS25176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3961-PC | 704 | CG3961-PC | 1..704 | 1..704 | 3737 | 100 | Plus |
| CG3961-PA | 704 | CG3961-PA | 1..704 | 1..704 | 3737 | 100 | Plus |
| CG3961-PD | 654 | CG3961-PD | 14..654 | 64..704 | 3375 | 99.1 | Plus |
| CG3961-PE | 666 | CG3961-PE | 14..666 | 64..704 | 3352 | 97.2 | Plus |
| Acsl-PC | 707 | CG8732-PC | 69..705 | 94..700 | 793 | 31.7 | Plus |
