BS25179.complete Sequence
1469 bp assembled on 2011-06-28
GenBank Submission: KX802725
> BS25179.complete
GAAGTTATCAGTCGACATGGCCAGTGGCAACAATGAAACTGAGCCGCTCT
ACTGCGGCAGCGGCATGGATAATTTTCATACAAGCTACAAGAACATGCAT
GGCTATGTTTCGCTGGTGGTCTGCATCCTGGGCACCATCGCGAATACCTT
GAATATCATTGTGCTAACCCGACGGGAGATGCGCTCCCCCACGAATGCCA
TACTCACGGGTCTGGCCGTGGCCGACCTGGCAGTTATGCTGGAGTATATA
CCCTACACCATACACGACTACATCCTGACGGACAGTTTGCCGCGGGAGGA
GAAGCTCAGCTACAGCTGGGCCTGCTTCATCAAGTTCCATTCGATTTTCG
CCCAGGTTCTGCACACCATTTCCATTTGGCTGACGGTGACCCTGGCTGTT
TGGCGTTATATAGCGGTGGGTTATCCGCAAAAGAATCGCGTATGGTGCGG
TATGAGAACCACCATAATAACGATAACCACCGCTTATGTGGTGTGTGTTC
TGGTGGTGTCGCCGTCGCTCTATTTGATCACGGCTATAACCGAATATGTC
GATCAGTTGGATATGAATGGCAAAGTGATAAACTCCATTCCCATGACCCA
GTACGTAATCGATTATCGTAATGAGTTACTGAGTGCCAGGACGGCTGCCC
TGAATGCCACGCCCACCAGTGCACCACTGAACGAAACTGTGTGGTTAAAT
GCGAGCACCTTGCTGACATCGACAACCACCGCTGCACCACCCACGCCATC
GCCAGTGGTGCGAAATGTTACTGTCTATAGGCTATACCACAGCGATTTGG
CGTTGCACAATGCCTCGCTGCAAAATGCCACATTTCTCATATACAGTGTA
GTGATTAAGCTGATACCATGCATAGCACTCACCATTCTGTCGGTTCGATT
GATCCTGGCCTTACTGGAGGCCAAGCGGCGGCGGAAGAAGCTCACCAGCA
AGCCCGCCACTCCGGGTGCCAGTAATGGAACCAAATCACCGGCCAATGGT
AAAGCAGCGGATAGGCCCCGGAAAAATAGCAAAACTCTGGAAAAGGAAAA
GCAGACGGATCGCACCACGAGAATGCTGCTGGCGGTGCTACTCCTCTTTC
TCATCACTGAATTTCCACAAGGGATTATGGGTCTGCTGAATGCTGTGCTC
GGAGATGTCTTCTATCTGCAGTGCTACCTAAGACTGAGTGACCTGATGGA
TATCTTGGCCCTGATCAACTCCAGCATCAACTTCATTTTGTACTGCTCCA
TGAGCAAGCAATTCCGCACCACGTTCACGCTGCTCTTTCGTCCAAAATTC
CTGGACAAGTGGCTGCCGGTGGCGCAGGACGAAATGGCAGCTGCTCGAGC
TGAACGCTCTGCGGTGGCACCGGTCCTGGAAAAGGGACGACAGCAGCCGC
AGGTGGTGATGGCCAGCACGACCACCAACATCACGCAGGTGACAAATCTG
TAGAAGCTTTCTAGACCAT
BS25179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MsR1-RB | 1671 | CG8985-PB | 1..1437 | 17..1453 | 7185 | 100 | Plus |
MsR1-RA | 1437 | CG8985-PA | 1..1437 | 17..1453 | 7185 | 100 | Plus |
MsR2-RC | 1944 | CG43745-PC | 20..488 | 42..510 | 1070 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MsR1-RB | 3544 | CG8985-RB | 426..1862 | 17..1453 | 7185 | 100 | Plus |
MsR1-RA | 3544 | CG8985-RA | 426..1862 | 17..1453 | 7185 | 100 | Plus |
MsR2-RC | 2918 | CG43745-RC | 573..1041 | 42..510 | 1070 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2342646..2343752 | 83..1189 | 5535 | 100 | Plus |
3L | 28110227 | 3L | 2343852..2344117 | 1188..1453 | 1330 | 100 | Plus |
3L | 28110227 | 3L | 2298178..2298578 | 110..510 | 1000 | 83.3 | Plus |
3L | 28110227 | 3L | 2299123..2299275 | 1037..1189 | 360 | 82.4 | Plus |
3L | 28110227 | 3L | 2338922..2338989 | 17..84 | 340 | 100 | Plus |
3L | 28110227 | 3L | 2299763..2299907 | 1188..1332 | 275 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:25:50 has no hits.
BS25179.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 14:39:39 Download gff for
BS25179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DmsR-1-RA | 426..1862 | 17..1453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:45 Download gff for
BS25179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MsR1-RA | 426..1862 | 17..1453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:55 Download gff for
BS25179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MsR1-RA | 426..1862 | 17..1453 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:55 Download gff for
BS25179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2338922..2338989 | 17..84 | 100 | -> | Plus |
3L | 2342648..2343750 | 85..1187 | 100 | -> | Plus |
3L | 2343852..2344117 | 1188..1453 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:45 Download gff for
BS25179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2343852..2344117 | 1188..1453 | 100 | | Plus |
arm_3L | 2338922..2338989 | 17..84 | 100 | -> | Plus |
arm_3L | 2342648..2343750 | 85..1187 | 100 | -> | Plus |
BS25179.pep Sequence
Translation from 16 to 1452
> BS25179.pep
MASGNNETEPLYCGSGMDNFHTSYKNMHGYVSLVVCILGTIANTLNIIVL
TRREMRSPTNAILTGLAVADLAVMLEYIPYTIHDYILTDSLPREEKLSYS
WACFIKFHSIFAQVLHTISIWLTVTLAVWRYIAVGYPQKNRVWCGMRTTI
ITITTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSIPMTQYVIDY
RNELLSARTAALNATPTSAPLNETVWLNASTLLTSTTTAAPPTPSPVVRN
VTVYRLYHSDLALHNASLQNATFLIYSVVIKLIPCIALTILSVRLILALL
EAKRRRKKLTSKPATPGASNGTKSPANGKAADRPRKNSKTLEKEKQTDRT
TRMLLAVLLLFLITEFPQGIMGLLNAVLGDVFYLQCYLRLSDLMDILALI
NSSINFILYCSMSKQFRTTFTLLFRPKFLDKWLPVAQDEMAAARAERSAV
APVLEKGRQQPQVVMASTTTNITQVTNL*
BS25179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MsR1-PB | 556 | CG8985-PB | 1..478 | 1..478 | 2427 | 100 | Plus |
MsR1-PA | 478 | CG8985-PA | 1..478 | 1..478 | 2427 | 100 | Plus |
MsR2-PB | 488 | CG43745-PB | 4..443 | 6..439 | 1523 | 68.8 | Plus |
MsR2-PA | 488 | CG43745-PA | 4..443 | 6..439 | 1523 | 68.8 | Plus |
MsR2-PC | 647 | CG43745-PC | 4..443 | 6..439 | 1523 | 68.8 | Plus |