BS25206.complete Sequence
3920 bp assembled on 2011-08-05
GenBank Submission: KX803957
> BS25206.complete
GAAGTTATCAGTCGACATGGATCCGCAGAAGATCACCGAGCTGGCTAACC
TGCTACGGCAGAACGGCGACAAAATATTGAGCTCCGAATTTACCTTGACG
TTATCAGGTTCCCTGCTGCGTGCGCTAAACGACTCCTTCACCCTGATCGC
GGACACTGAAATCGGAACTGGCGCGGGTTACCTCCAGCCGCAGTCTTTTC
AGGTGGTCAAGCCCATCAACGCCAAGTCCAGCGTCTTCCCCGACCTCCAG
CTTGTCCATGACTTTGTGCAGAAAACGACGCTTTTGAAGCTGACCTACTT
TCCCAGCGAACACTATTTTGAGGGCGCCATCGACATAGCGAAGTTTCGAG
CACTGCGCCGCCTCGAGGTAAACAAAATCAACATCGGCCAAGTTGTGGGC
ATCCAACCGCTGCGCGGCCAGCTGCAACATTTGATCTGCGTAAAAAGCCT
TACCAGCGTGGACGACATTATCACGCGCTGCGGCGGCGACAACTCGAATG
GCTTTGTGTGGAACGAGCTAAAGACGGCCGATTTCAGCTACAACAGCCTG
CGCAGTGTAGATACCGCCCTGGAGTTCGCACAGCACCTGCAACACCTAAA
CCTTCGGCACAATAAGCTCACCAGCGTGGCCGCCATCAAATGGCTTCCGC
ATCTTAAGACCCTGGACCTGAGCTACAACTGCCTTACACACCTTCCACAG
TTTCACATGGAGGCCTGCAAGCGACTACAGCTATTGAACATCAGCAACAA
CTACGTAGAGGAGCTTCTGGACGTGGCAAAGCTGGACGCTCTGTACAACC
TGGATCTGTCCGACAACTGCCTGTTGGAGCACTCGCAGTTGCTGCCACTG
AGTGCCCTGATGAGCCTGATTGTACTAAATCTGCAAGGAAATCCCCTTGC
TTGCAATCCCAAACATCGCCAGGCGACTGCACAGTACTTGCACAAGAACT
CCGCAACTGTGAAGTTTGTCTTGGACTTTGAGCCGCTGACTAAGGCGGAG
AAGGCGCTGACGGGCAGCCAAAAGTGGCGCTACATAAGCGGGCTTAGCCA
CCGCTCGCCCAGGAGTACCTCCATGTCCATCAACAGCTCTAGTGCTTCCA
TAAACACCAGCGACGGCTCCCAGTTTTCCAGTTTCGGCTCGCAGCGTTCG
GTATCTATAAGAGGAAAGAACTACACTTTGGAAGACAACCAATCGATGGA
CACCTCGCAATCTAGCAAACGCATAAGTTCGTGTAAAATCAGGACAGTGG
ACATAGAAGAGAGCAGTGAGATCAATACAGACGCAGCATCCGTTTCCACG
CCAAATCCTCGATCCGAATATGAAGAGGAACCAGATAATTCGCACCTGGA
GACCAAGAAAAAAATCGAGACACTACGTCTCACTTATGGCAATGAATGGT
TGAAGTCCGGCAATGCTGAGCTGATGCTGGGAATCGAAACGCCGCAGCCA
ACTGAACGGGAGCGCAATGAGTCTCGCCAGCTTTTCAATGAGTATCTGGG
CGAACTATCTGGATTCACAGAAGCAAAAAATGACTCTGAGCACCACAACA
TAAGCTCCACACCCACGAACAACGTTTTGTTAGCTTCCACCTTTGACGCC
ACCATTACTCCTATTAAATCTGAAGCGAACGATACAAGTGGTCAAACTCT
GTACGAAACCTGCACTGAGGGTGAAGAGACAAACTACGAGAGTTTTGGCA
ACAACACTACGGAGCTGTCGACAGAAGAACGTCCGCCTGACAGGCACGAG
GAATTGTTGAGACTTTATGCAAGTAGCTCTAATGCTCAGGATGAGGATCC
GGTATCCGATGCTGAGTCTGATGAGGAGACCTACATAGTCTACCATGAAC
AGAAACCGAGCGAGGTTCTGTTTCTTACCATATCATCGAATTTTATACGC
GAAAAAGACACGTTAACTGAAAGGACGAAAGCCAAATGGAGTCTAAAAAT
CCTCGAGTCATGCGAGCGTGTTAGGTCCAACACCTTGCGCATCAATTTCG
ACACAATGCGCAAGGATAAACAGGAACGTATCTACTGCGTGGAGAATACG
CTGTGCCAGGAACTGGAGAAGAAACTACGAGACATTCTATCGCAGCGTGA
TCTAACCGAAATGAACATATCCATCTATCGCTGTGTGAATTGCCTAACGC
AGTTTACTATTGAGCAAAAAAGCAAGCGATATAAAGCAAAGGAATTGCGA
TGTCCGGATTGTCGCAGTGTCTATGTGGCTGAAGTAACCGAATTGTCCTC
ATCTTTGTCCAAACCTTCTGGTGAAGTGGCGGCAGAGCCCAAACTTTCAC
CCGCCATGATTGTGGAGGAATCCCCAGTGGAGGAACTCGCTGCGGCGATA
AATAAGGAAGAAAGCAACAGCATTGGTTCCGCCAATTCGCTAAATGGAAG
CAGCTCTTGCTCAAAAATTACCAACTCACAGAGCTCTTTCGACTCCAATC
AATCCGTAGTGGGCAGCTCGAACACGGATCGGGATATGGAGTTTCGAGCC
AACGAAAGTGATGTGGACATCATCTCCAATCCGAGCCAGTCCAGCATAGA
GGTACTAGATCCGAACTACGTGCAGAGCGCCAGTCGCAAGACCTCAGAAG
AGCGCCGCATATCCCAGCTACCTCATCTGGAGACGATACACGATGAAGTA
GCGAAATCGAAGAGCTTCATCGAACGCGAGTTTGGTCAGCTTCTGGCGGA
GCAGGCTCAGCCTACGACACCTTCGACTGCAGCTCCCTTGGCTCCTGCAA
AATCGGCTGTCCCATCCCATGTACCGCTGACAGAGAGCAGCTCGTCGGGA
TCCGTAACGGACAGCATATGTACTACCTACGAGCAGCAGGCCACTGATGC
GCCACAAAATCTACAAAATTCCCTGCTCACCGAGTCGTCAAACAGCCAAG
TTAGTGGTTCGGATGCGGAATCTAATAGCCGTTTGAAAAGCGCCGAGGAT
GCCAGCCTGCTGCCTTTCGCATCTGTATTTCAATCAACCAATCTGCTCAT
GTCCAGCTCAAAGAAGTTGATCGAGTCGGAGGCAACTGTTTTTGGTACCC
AGCCGTACAAGTTTAACTACAGCGACTTTAATGATATCGATCACCGTCTG
AAGCTCTACTTCTACCAACGAAAGTTCAAAGAGGATGGCGAGCATTTCAA
GTGGTTGGCCAAAGGTCGCATCTACAATGAGCAGACCCAATCCTTGGGAG
AAGGGCTTGTGGTAATGTCCAACTGCAAGTGCTATCTAATGGAGGCCTTT
GCAGAACCCCATGACGATGTGGCCAAATGGCTGAGGCAGGTCGTCAGCGT
GGCAGTCAATCGTTTGGTGGCCATTGATCTGTTGCCCTGGAAACTTGGCT
TGTCCTTCACCTTAAAGGATTGGGGAGGATTTGTCCTGCTGTTGCATGAC
ATGCTGAGGACGGAAAGTTTACTGAATTATTTACAACAAATTCCTCTGCC
TGAGCAGTGCAAGCTGAATCATCAACCATCTGTCACACTCAGCCATCAGT
GGGAAACTATTGCGTCCGAACCAGTCAAGATGTGCTCCCTGATTCCCAGC
TGCCAATGGATCTGTGACCAGGAGAAGAGCTCCTTTGAACCCTCCCTGCT
CCTAATCACGGAGACACATTTGTACATCTCAGGAAATGGCAAATTCTCGT
GGCTGTCAGATAAAGTTCAGGAAAAGCCCATTCAACCAGAACTTAGCCTT
AATCAACCACTGAGCAATTTGGTCGACGTGGAGCGCATTACAGACCAAAA
GTATGCGATCAACTTTATTGATGAGACGCAAAACAGGTGCGAGATATGGA
AGTTGCAGTTCGAAACGCATGCCAATGCCGCATGTTGCCTGAATGTCATC
GGAAAGGGATGGGAGCAGCTATTTGGAGTGCCATTCAGTCTCTCTGGAAC
GTGAAAGCTTTCTAGACCAT
BS25206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9044-RB | 3888 | CG9044-PB | 1..3888 | 17..3904 | 19440 | 100 | Plus |
| CG9044-RC | 3957 | CG9044-PC | 1..2359 | 17..2375 | 11795 | 100 | Plus |
| CG9044-RC | 3957 | CG9044-PC | 2429..3957 | 2376..3904 | 7645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9044-RB | 4356 | CG9044-RB | 234..4122 | 16..3904 | 19445 | 100 | Plus |
| CG9044-RC | 4425 | CG9044-RC | 234..2593 | 16..2375 | 11800 | 100 | Plus |
| CG9044-RC | 4425 | CG9044-RC | 2663..4191 | 2376..3904 | 7645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5950122..5951819 | 105..1802 | 8490 | 100 | Plus |
| 2L | 23513712 | 2L | 5953405..5954477 | 2365..3437 | 5320 | 99.7 | Plus |
| 2L | 23513712 | 2L | 5954535..5955001 | 3438..3904 | 2335 | 100 | Plus |
| 2L | 23513712 | 2L | 5952444..5952628 | 2192..2376 | 925 | 100 | Plus |
| 2L | 23513712 | 2L | 5952054..5952192 | 1922..2060 | 695 | 100 | Plus |
| 2L | 23513712 | 2L | 5952250..5952384 | 2058..2192 | 675 | 100 | Plus |
| 2L | 23513712 | 2L | 5951876..5951998 | 1802..1924 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 5949899..5949992 | 16..109 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:11:17 has no hits.
BS25206.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 09:59:30 Download gff for
BS25206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9044-RB | 201..4087 | 17..3903 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:31 Download gff for
BS25206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9044-RB | 235..4121 | 17..3903 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:18 Download gff for
BS25206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9044-RB | 235..4121 | 17..3903 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:18 Download gff for
BS25206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5949900..5949990 | 17..107 | 100 | -> | Plus |
| 2L | 5950125..5951819 | 108..1802 | 100 | -> | Plus |
| 2L | 5951877..5951997 | 1803..1923 | 100 | -> | Plus |
| 2L | 5952056..5952191 | 1924..2059 | 100 | -> | Plus |
| 2L | 5952252..5952384 | 2060..2192 | 100 | -> | Plus |
| 2L | 5952445..5952627 | 2193..2375 | 100 | -> | Plus |
| 2L | 5953416..5954477 | 2376..3437 | 100 | -> | Plus |
| 2L | 5954535..5955000 | 3438..3903 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:31 Download gff for
BS25206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5949900..5949990 | 17..107 | 100 | -> | Plus |
| arm_2L | 5950125..5951819 | 108..1802 | 100 | -> | Plus |
| arm_2L | 5951877..5951997 | 1803..1923 | 100 | -> | Plus |
| arm_2L | 5952056..5952191 | 1924..2059 | 100 | -> | Plus |
| arm_2L | 5952252..5952384 | 2060..2192 | 100 | -> | Plus |
| arm_2L | 5952445..5952627 | 2193..2375 | 100 | -> | Plus |
| arm_2L | 5953416..5954477 | 2376..3437 | 100 | -> | Plus |
| arm_2L | 5954535..5955000 | 3438..3903 | 100 | | Plus |
BS25206.pep Sequence
Translation from 16 to 3903
> BS25206.pep
MDPQKITELANLLRQNGDKILSSEFTLTLSGSLLRALNDSFTLIADTEIG
TGAGYLQPQSFQVVKPINAKSSVFPDLQLVHDFVQKTTLLKLTYFPSEHY
FEGAIDIAKFRALRRLEVNKINIGQVVGIQPLRGQLQHLICVKSLTSVDD
IITRCGGDNSNGFVWNELKTADFSYNSLRSVDTALEFAQHLQHLNLRHNK
LTSVAAIKWLPHLKTLDLSYNCLTHLPQFHMEACKRLQLLNISNNYVEEL
LDVAKLDALYNLDLSDNCLLEHSQLLPLSALMSLIVLNLQGNPLACNPKH
RQATAQYLHKNSATVKFVLDFEPLTKAEKALTGSQKWRYISGLSHRSPRS
TSMSINSSSASINTSDGSQFSSFGSQRSVSIRGKNYTLEDNQSMDTSQSS
KRISSCKIRTVDIEESSEINTDAASVSTPNPRSEYEEEPDNSHLETKKKI
ETLRLTYGNEWLKSGNAELMLGIETPQPTERERNESRQLFNEYLGELSGF
TEAKNDSEHHNISSTPTNNVLLASTFDATITPIKSEANDTSGQTLYETCT
EGEETNYESFGNNTTELSTEERPPDRHEELLRLYASSSNAQDEDPVSDAE
SDEETYIVYHEQKPSEVLFLTISSNFIREKDTLTERTKAKWSLKILESCE
RVRSNTLRINFDTMRKDKQERIYCVENTLCQELEKKLRDILSQRDLTEMN
ISIYRCVNCLTQFTIEQKSKRYKAKELRCPDCRSVYVAEVTELSSSLSKP
SGEVAAEPKLSPAMIVEESPVEELAAAINKEESNSIGSANSLNGSSSCSK
ITNSQSSFDSNQSVVGSSNTDRDMEFRANESDVDIISNPSQSSIEVLDPN
YVQSASRKTSEERRISQLPHLETIHDEVAKSKSFIEREFGQLLAEQAQPT
TPSTAAPLAPAKSAVPSHVPLTESSSSGSVTDSICTTYEQQATDAPQNLQ
NSLLTESSNSQVSGSDAESNSRLKSAEDASLLPFASVFQSTNLLMSSSKK
LIESEATVFGTQPYKFNYSDFNDIDHRLKLYFYQRKFKEDGEHFKWLAKG
RIYNEQTQSLGEGLVVMSNCKCYLMEAFAEPHDDVAKWLRQVVSVAVNRL
VAIDLLPWKLGLSFTLKDWGGFVLLLHDMLRTESLLNYLQQIPLPEQCKL
NHQPSVTLSHQWETIASEPVKMCSLIPSCQWICDQEKSSFEPSLLLITET
HLYISGNGKFSWLSDKVQEKPIQPELSLNQPLSNLVDVERITDQKYAINF
IDETQNRCEIWKLQFETHANAACCLNVIGKGWEQLFGVPFSLSGT*
BS25206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9044-PB | 1295 | CG9044-PB | 1..1295 | 1..1295 | 6649 | 100 | Plus |
| CG9044-PC | 1318 | CG9044-PC | 1..1318 | 1..1295 | 6609 | 98.2 | Plus |
| CG11807-PC | 491 | CG11807-PC | 123..471 | 6..328 | 229 | 25.4 | Plus |
| CG11807-PB | 491 | CG11807-PB | 123..471 | 6..328 | 229 | 25.4 | Plus |
| CG11807-PA | 491 | CG11807-PA | 123..471 | 6..328 | 229 | 25.4 | Plus |
