BS25211.complete Sequence
992 bp assembled on 2011-09-14
GenBank Submission: KX800501
> BS25211.complete
GAAGTTATCAGTCGACATGTGCACTCTGCACCCCGAGGAGGAAGCTCACC
TGATGGCCATGGCCAGCGGAGGACAACCAACGCGTACGGCCAGTCCAAGG
CCATTGGTCACCGCCTCCATTGCAGCACCACGATCGCTGTTTGATGTCTG
CTGGGACGATGTGCTCATCCCGCAGGTTGCCGTCTACCTGTCGCTCAAGG
ATCTCTTCAACCTGCGCTGCTGCTCCCGTACCGCACAACGCTTTGTGGAG
GCTGCGCTGGAAAAAAGGCAGGAACTTCATCTCTCTGGGAACAACACAAA
GAATATCGACGTGGCCTTTCGAGTGCTGGCCCGATGTTGCCAACGATTGG
AGGTGCTTCATCTGGCCTGCTGCCGATGGCTAACAGATGAGCTGCTGCTG
CCACTGCTGGCCAACAACAAGAAACGCCTGTGGGCCGTCAACCTGAACGA
ATGCGTCAACATCACGGCCCTTTCGCTGCAGCCGATCATAGTGGAGTGCA
AGGAGCTGCGCGTACTCAAGCTGTCCAAGTGCCAGTGGCTGACCACGGGA
GCAGTGGACGCTTTGACGCTGCACCAAAGCAAGCTGGTGGAGTTCGACAT
CTCCTATTGCGGCGCAATTGGAGAGCGCTGCTTGATTATCTTCTTCAGGA
AACTTAACAAGCTCACCGTCCTGTCGCTGGCAAATACGCCCAGTGTCACC
GATCAGGTGCTCATCCAAATCGGGAACTATTGCCGCGAACTGGAGCACAT
CAACGTGATCGGGTGTGCGGCTATCTCCGACTATGGCGTGCACGCTTTGA
CAGTGCACTGTTTGCGGCTACGGACCTTGCTCATTCGACGTTGTCCGCGG
GTCACAGAACTCTCCCTGGCGCCGCTCCGCCAGCGGCGTCTTTACATCGA
TAGGCCACAGCCGGATGTGGGGCTCAACGCTTACAACTTGAACGACTTCT
ATCCCAGCGATTTCCTTGTTTACTAGAAGCTTTCTAGACCAT
BS25211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jet-RA | 960 | CG8873-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
| jet-RB | 942 | CG8873-PB | 1..776 | 17..792 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jet-RA | 1453 | CG8873-RA | 111..1071 | 16..976 | 4805 | 100 | Plus |
| jet-RB | 1241 | CG8873-RB | 111..887 | 16..792 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4948898..4949674 | 792..16 | 3885 | 100 | Minus |
| 2L | 23513712 | 2L | 4948588..4948771 | 976..793 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:25:33 has no hits.
BS25211.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 12:05:30 Download gff for
BS25211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jet-RA | 79..1038 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:48 Download gff for
BS25211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jet-RA | 112..1071 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:20 Download gff for
BS25211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jet-RA | 112..1071 | 17..976 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:20 Download gff for
BS25211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4948588..4948771 | 793..976 | 100 | <- | Minus |
| 2L | 4948898..4949673 | 17..792 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:48 Download gff for
BS25211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4948898..4949673 | 17..792 | 100 | | Minus |
| arm_2L | 4948588..4948771 | 793..976 | 100 | <- | Minus |
BS25211.pep Sequence
Translation from 16 to 975
> BS25211.pep
MCTLHPEEEAHLMAMASGGQPTRTASPRPLVTASIAAPRSLFDVCWDDVL
IPQVAVYLSLKDLFNLRCCSRTAQRFVEAALEKRQELHLSGNNTKNIDVA
FRVLARCCQRLEVLHLACCRWLTDELLLPLLANNKKRLWAVNLNECVNIT
ALSLQPIIVECKELRVLKLSKCQWLTTGAVDALTLHQSKLVEFDISYCGA
IGERCLIIFFRKLNKLTVLSLANTPSVTDQVLIQIGNYCRELEHINVIGC
AAISDYGVHALTVHCLRLRTLLIRRCPRVTELSLAPLRQRRLYIDRPQPD
VGLNAYNLNDFYPSDFLVY*
BS25211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jet-PA | 319 | CG8873-PA | 1..319 | 1..319 | 1669 | 100 | Plus |
| jet-PB | 313 | CG8873-PB | 1..296 | 1..297 | 1452 | 94.6 | Plus |
| CG9003-PC | 426 | CG9003-PC | 96..293 | 98..296 | 216 | 28.1 | Plus |
| CG9003-PG | 437 | CG9003-PG | 107..304 | 98..296 | 216 | 28.1 | Plus |
| CG9003-PD | 437 | CG9003-PD | 107..304 | 98..296 | 216 | 28.1 | Plus |
| CG9003-PC | 426 | CG9003-PC | 11..290 | 47..312 | 211 | 25.5 | Plus |
| CG9003-PG | 437 | CG9003-PG | 22..301 | 47..312 | 211 | 25.5 | Plus |
| CG9003-PC | 426 | CG9003-PC | 122..365 | 48..287 | 177 | 24.8 | Plus |
| CG9003-PG | 437 | CG9003-PG | 133..376 | 48..287 | 177 | 24.8 | Plus |
| CG9003-PC | 426 | CG9003-PC | 83..330 | 60..281 | 154 | 22.5 | Plus |
| CG9003-PG | 437 | CG9003-PG | 94..341 | 60..281 | 154 | 22.5 | Plus |
