BS25222.complete Sequence
1778 bp assembled on 2011-10-14
GenBank Submission: KX805906
> BS25222.complete
GAAGTTATCAGTCGACATGTTGCGAATGATGCGAAGTTCCTCCTCCAGAT
GCTCTAGTCTTCAGCAGAGCTTGTTGAAAAGTTCGACACGCTGTCTGGGT
TCCGTTATACCGGACCTTAAACTGAAGGACTTCCCGATCGCCAATGAGCC
AATCCTGGGATATCTCAAGGACTCTAAGGAGCGTAAGGCCCTCGAGCAGG
CTCTAAAGGGCACGGCCTCGAGTTGCGAAGACATCCCCATCGTGATCGGC
GGCAAGGAGTACAAGACGCCGGAGGTTCGATACCAGGTCATGCCCCATGA
CCACCAACACAAGCTGGCCAGCTTCTACTACGCCGACAAGAAGCTTATCG
AGAAGGCCATCAAAACGGCGGTGGAAACACAGCCCAAGTGGGACCGTGTG
TCGATTGCAGACCGTCTGAAGATCTGGGAGAAGGCAGCGGACCTAATGGC
AACGACGTACCGCCAGGATCTCAACGCCGCCACCATGCTGGGTCAGTCAA
AGACGGCGATTCAGGCGGAAATCGATTCAGCAGCGGAGCTTATCGACTTT
ATACGAATGAATGCCTATTTTCTGAAGGAGGTCACTAAATACCAGCCCAT
CAGCGAGAACATAAAGGTCACGAAGAACTCCTTGCGCTATCGTGGCATTG
ATGGCTTCATCGCCGCTGTCAGCCCCTTTAACTTTACGGCCATCGGCGGC
AACTTGTCCTACACGCCAGCTCTGATGGGAAACGGCGTGCTGTGGAAGCC
CTCGGACACTGCCATGCTGTCCAACTGGATTATTTTCAAGATTATGCGCG
AAGCGGGAGTGCCCGATGGAGTCGTTAACTTTGTGCCCGCCGATGGGCCC
GTGTTTGGAGACACGATTACGGCCAGTCCCCACCTGGCAGGCATCAATTT
CACCGGCTCTGTGCCAACCTTTAACCGCCTGTGGAAGCAGGTGGGCAACA
ACATTGACAACTACGTGAACTTTCCTCGCTTGACTGGTGAGTGTGGCGGC
AAGAATTTCCACTTTATACATGCATCAGCCGACGTTGAGTCAGTGGTGAC
CTCCACGATACGCTCAGCATTTGAGTACTGCGGCCAGAAGTGTTCCGCCT
GCTCGCGAATGTATGTGCCGGAATCCCTTTGGCCACAGATCAAGGAGGGC
CTGGTATGCGAGGCAGCAAAGCTGAAGATCGGTGACGTTCAAGACTTCAG
CAGCTTCACGTCGGCTGTGATTGATGACAAAGCATTTAAACGCATTACGG
GCTACATTGAGCATGCCAAAAAATCCCCGAACCTCGAGATTCTCGCCGGA
GGCACTTACTCAGACAGCAAGGGCTACTTCGTTAATCCGACCATTGTACT
CAGCAAGGATCCCAAGGACCGGATCATGACCGAAGAGATTTTCGGTCCCG
TGCTATCTATTTATGTGTACAAGGAGTCGGACCTCCTTGAGACCATGAAA
CTGGTGCACACCTCTACCAAGTTTGCTTTAACCGGAGCAGTATTCGGGCA
GGACGAGGATTTCGTCAAGTGCGCTCTGCAGGAGTTTAAAATGGCCGCTG
GAAACTTCTACATCAACGACAAGTCCACTGGATCCGTGGTGGGCCAGCAG
CCATTCGGAGGCGGCCGGATGTCCGGCACCAATGACAAGGCCGGAGGACC
ACATTATATTCTGCGCTGGACCTCTCCGCAGTCCATCAAGGAGACCTTTG
TGCCGCTGCGGGACGTCAACTATCCATACATGTGCGAGTAAAAGCTTTCT
AGACCATTCGTTTGGCGCGCGAAACGGG
BS25222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5CDh1-RE | 1725 | CG7145-PE | 1..1725 | 17..1741 | 8625 | 100 | Plus |
| P5CDh1-RF | 1725 | CG7145-PF | 1..1725 | 17..1741 | 8625 | 100 | Plus |
| P5CDh1-RD | 1725 | CG7145-PD | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5CDh1-RE | 2679 | CG7145-RE | 131..1855 | 17..1741 | 8625 | 100 | Plus |
| P5CDh1-RF | 2823 | CG7145-RF | 275..1999 | 17..1741 | 8625 | 100 | Plus |
| P5CDh1-RD | 2772 | CG7145-RD | 224..1948 | 17..1741 | 8625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21839061..21839536 | 555..80 | 2380 | 100 | Minus |
| 3L | 28110227 | 3L | 21837776..21838147 | 1507..1136 | 1860 | 100 | Minus |
| 3L | 28110227 | 3L | 21837489..21837723 | 1741..1507 | 1175 | 100 | Minus |
| 3L | 28110227 | 3L | 21838212..21838434 | 1138..916 | 1115 | 100 | Minus |
| 3L | 28110227 | 3L | 21838492..21838680 | 915..727 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 21838740..21838913 | 728..555 | 870 | 100 | Minus |
| 3L | 28110227 | 3L | 21839666..21839730 | 81..17 | 325 | 100 | Minus |
| 3R | 32079331 | 3R | 21879463..21879637 | 669..843 | 290 | 77.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:43:37 has no hits.
BS25222.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:10 Download gff for
BS25222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7145-RD | 237..1959 | 22..1746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:52 Download gff for
BS25222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5CDh1-RD | 229..1951 | 22..1746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:45 Download gff for
BS25222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5CDh1-RD | 229..1951 | 22..1746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:45 Download gff for
BS25222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21838212..21838434 | 916..1138 | 100 | <- | Minus |
| 3L | 21837486..21837723 | 1507..1746 | 99 | <- | Minus |
| 3L | 21838492..21838679 | 728..915 | 100 | <- | Minus |
| 3L | 21838741..21838912 | 556..727 | 100 | <- | Minus |
| 3L | 21837777..21838144 | 1139..1506 | 100 | <- | Minus |
| 3L | 21839061..21839534 | 82..555 | 100 | <- | Minus |
| 3L | 21839666..21839725 | 22..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:52 Download gff for
BS25222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21830586..21830823 | 1507..1746 | 99 | <- | Minus |
| arm_3L | 21830877..21831244 | 1139..1506 | 100 | <- | Minus |
| arm_3L | 21831312..21831534 | 916..1138 | 100 | <- | Minus |
| arm_3L | 21831592..21831779 | 728..915 | 100 | <- | Minus |
| arm_3L | 21831841..21832012 | 556..727 | 100 | <- | Minus |
| arm_3L | 21832161..21832634 | 82..555 | 100 | <- | Minus |
| arm_3L | 21832766..21832825 | 22..81 | 100 | | Minus |
BS25222.pep Sequence
Translation from 16 to 1740
> BS25222.pep
MLRMMRSSSSRCSSLQQSLLKSSTRCLGSVIPDLKLKDFPIANEPILGYL
KDSKERKALEQALKGTASSCEDIPIVIGGKEYKTPEVRYQVMPHDHQHKL
ASFYYADKKLIEKAIKTAVETQPKWDRVSIADRLKIWEKAADLMATTYRQ
DLNAATMLGQSKTAIQAEIDSAAELIDFIRMNAYFLKEVTKYQPISENIK
VTKNSLRYRGIDGFIAAVSPFNFTAIGGNLSYTPALMGNGVLWKPSDTAM
LSNWIIFKIMREAGVPDGVVNFVPADGPVFGDTITASPHLAGINFTGSVP
TFNRLWKQVGNNIDNYVNFPRLTGECGGKNFHFIHASADVESVVTSTIRS
AFEYCGQKCSACSRMYVPESLWPQIKEGLVCEAAKLKIGDVQDFSSFTSA
VIDDKAFKRITGYIEHAKKSPNLEILAGGTYSDSKGYFVNPTIVLSKDPK
DRIMTEEIFGPVLSIYVYKESDLLETMKLVHTSTKFALTGAVFGQDEDFV
KCALQEFKMAAGNFYINDKSTGSVVGQQPFGGGRMSGTNDKAGGPHYILR
WTSPQSIKETFVPLRDVNYPYMCE*
BS25222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5CDh1-PE | 574 | CG7145-PE | 1..574 | 1..574 | 2995 | 100 | Plus |
| P5CDh1-PF | 574 | CG7145-PF | 1..574 | 1..574 | 2995 | 100 | Plus |
| P5CDh1-PD | 574 | CG7145-PD | 1..574 | 1..574 | 2995 | 100 | Plus |
| P5CDh1-PB | 574 | CG7145-PB | 1..574 | 1..574 | 2995 | 100 | Plus |
| P5CDh1-PA | 574 | CG7145-PA | 1..574 | 1..574 | 2995 | 100 | Plus |
