BS25238.complete Sequence
4034 bp assembled on 2011-08-05
GenBank Submission: KX803226
> BS25238.complete
GAAGTTATCAGTCGACATGGTTGTTGGCACAGCCACAATGCCCCCGGAAA
TATTGCAAGTGCCCGCGATAAAAAAAGAGCACTCGGAGCTGCTGGAAAAC
CCTGCGAACTCTAAACCTTGTGATCCCGACGAAACTGCTGAGGAGGGAGT
CGTCGAGGAGGATCGTGAGGAGGGCGAGATTGTAGACGAATTCGAGCTGA
TCATTTCGTCCGAGGATGACGAGTTCAAGTTGCGCGCTCGGATCCACCAG
CTGGAGGAGAACAACAAGGATGTGGAGCGCATGGACATGCTATCCGCCAA
TTTGGCACATCAATACAATTACCCGAAGCCTGTACCGCGGTTACCGCCTC
AGCAGCAAAAGTCTCCCGTTTACATTCTGTCGGATGTGTCGAGCCAGTCT
GAGGATGAGTTCGAGGCCCAGAGGAAGTATCGCAAGCAGAAGGGTCGCCG
CCTGGAGCTCGGCAAAAGGCATAATCATTCATCGTTGAGGGACTACCGGC
GGAATCCCTTTGCCAGGCGCCACAAGCACTCTTCTCTACCTCCTCCGGTC
ACCACACAGCGTCGGCGGCAAGACTATCACCATAATCAGCTAAACAATCG
CTACCAGCGTCGCCACCAACAATACTTTGATCTTGAAGATTCCCTGGAGA
GCGACGGCGAGCTGGGTGAGTACGACGTAACCTGTGACAACGATGACGAC
GAGTTGGACCTGCAAAAGCTTGAACTGAGCAGGGATAAGTTGCGCGTGGC
TTTGGCGCGGGAAAAGCGAGAATTCGTGGGTCAGTACAAAAACAGCCTGA
GTGAGCGACTTCAGTACCGTGTACACAAATCGCCCAGCCCCAAGCACAGC
GAGGAGTACCAGCAAGAGGAGCAGGAACTGCCACTTTCGCCAGTACAGCC
AATATCGGATGACGGCGAGGAGGAACCTCAGGAGCAGAATGTGCCGCAAA
GGGAAGATCCTGCCGAGCTTAAGCTTCGACTGATAGCCCTTAAATCTGCC
ATACTGAAAAAGCATTTAGCGCGAAAGAAACGGGACGCGGAGCGGGCTTA
CTCGCCCACTGATATGATCAATCGCGTGCATCCCGCCATTTCCAATGACG
ACGACATCGATGACTTAATGGAGATCAGCCCAGCCGCATCGCCAGATCGA
GAACAAAGTCCGCCGAGGTACTCTATTGATTATGCCGTGGACACAAAGCC
TGTGGACATGGATCTAGCCGATACGGACAGCGATGATCAGAAAAAAGAAA
TGTGGAATTCGTGGTCCAACAACTGGAACTCAATTGATAACGCTGGCGGC
AGTTGGCGCTGTTTTATGCCCAACAATTTGCCACCTGTGTCGGTTCCCAT
TGTGATAGACGAAGATGATGAGCTAGATTTAAATACGGATAATCGGATAA
GGAGAGAGATTATGGCTTACGATGACGACGAAGTACCGCCGCCACCGCCG
CCCTTTCACATTCCACAAATGCATCTGGAGGACGAGGATGCCAGGGATGC
CATGCACCTAGTCGATCAGCATTCCAATCATAGCTATAACTCGGAGTTGC
AGACCGTTTCCATGGAAAACTCGCAGATGCATATAAACTCATTTGACCAA
TTCCAGCCGAATTCGAGTGACGATGAGGCAGGAGCTTTGCGAGCTATTCT
TCTATCCAATTTGCGCGCAAATAGGCCCCCACCACCACCTCCAAGAACGC
CACCACCTATTGATTGGGAGCTTAATACTGCTCCGGGTCAGGTGCAGGTC
CCAGAACCTGTTGCCGCTCCAACGCCTTCTTACGTACCTGGCTCCGTGAC
TCAACCTAAGGAAGATTCAACGCAAGACAATGATTCAGATGATCCAGAAG
AGCTGCGCTTATTGCTCCTTTCCAGCATAGCGACCAAAAAACGGACGAAT
GGACCAAACCCAAAATCCGGTTTAAGACCAGAGATACTCAAGAATGCTTT
AAAACGTTTCCAGCCCTCGGAATTGCCTATAAAAGATGAACGGTCTCAGG
ATCAACATCCAATTTTAGATGAATGTAATGTACTGAAAACAGAAAAGGAG
ATAGAAAAAGAAACTGCAGTTGAGCCAGTTGCATTAGAAACTGCGACCAT
TAACGTGGAATCTGTGGAGGTGCCACAGCCGCTGGTGCAGGAACAGAAAC
CATCGTTCTCACCAACAAAAATCATAAAAATTGTAAAGCCCAACAAGGTG
ATAAACAAAAAAACTACTAAACGGAAATTGCTCGCGATTGAAGGTTCAGG
GTTGAGCATAAAACGGCCGAATGTGTTAATGGATAAGGAACCCAGCGCTC
CACTGCGTAGTCAGGAAGTGATCGCATCTAGCACTCGCCTGATCACCACC
GTAGATCCAGCCAGCATCAAAGTAAATAAGCTGATCATTAGCTTAGCAGA
GGAGTCGCCAGCCAGTGATGATGACCTGGAGCTGAGTTCGAGCTTCGCCT
ATGTAAACACAGACATTGCCAGCCCCTTGAGTTTGGCTATGGGCAGCTTC
AGTGGGTCAACCACCAGATCAAATACTCCCATATCCGAGATTGCCGAAAC
GGTTCCCAATGCCAATATTAATCTCAGACGAACTGTGATTAACGATTACT
TTGAGAAGAGGATCGACGATTTTCTGAAGCAAGCCAGATCAAAAGCTCCC
ACAATGAACTCACCAGAGGCGGCGAAAGAAAATACGTCTGAGAAACCTCA
GGTTAAGGAGGAACCTCCAAAAAGTGTAACTTCTCCTAAGACACAGCCGC
CTCCAAAGACAACGCCGGTGGCTGTTCGACATTTACCAGTGGCATCGCAG
AAGGAATACCTTCGTTTGGTCGAGCGTATGCAAATGTTGGAACGAAAAAA
GGTTCGAGCGGCCAAGACTGCTGCTCCTGTTGCCAAAAGCAAGGCGCCTA
CTGTTGATAAGCCAACGCCGAAAAACAATGCATCGTTAAGCACGGCGAAT
ATTGTAAACAACCCAGCCAAGAAAGACCTAGGCAGTACAACAAGTTCCCC
TATGACCAACGATAAGGCTACCTCAGCAGTTCAGAAACCACAAGTCAAAA
CTGCGAATTTAAAATCGGCAAAAACAAAACCTAAGCAAAATCACCAGATG
TCCAAGGAGACTCGGCTGAAGGCATTTGAGAATTCTTTTGTTAAGATTGG
GGGGAGCATGCTAATCAATCTAGACAAATCGCTGGAATTGGTGGAAGAAG
CCAAGAAGTCAAAGGCAATACGCTTGCGATGCTCACAGCGTCTCAAGGAA
CTCTATGACGAAATGCAGACATTAAGGCAGGCGGTTAAACAGGAGGAACT
TAAGCTGTCGAAGATTCAGCCCGAGATTCAGGCCAGCCATGAGATCATCA
TATCACTTAAGCAGAAACGACATAAACTCCATACGGCGGCTATGGACTTG
GGCCGTGGATTAAGGGGCGATGACTACAGGTTAATCGACGAGGGAAAGGC
AGCCATCACCGCCAAATCAACGCAGCTTACCAAGGAGATACGCCTGTACA
ATTCTATAGTAAACTACGCAGACCTTACGAAACTGACTGATGCGGAGATT
AGTCAACAAAACACTGTAATGCCAACGGAGCCCAAAACGGTTCAACATGA
GGAGTCAAGGGAGAATGAACCTTTAACGGATCCTCAGGTTAAAAATCAAA
GTGAAACAACGGAGACAGAGCCTGCGATTGGAAAACAACCTGAAACGGAG
ACTGACCCTCCAGATGAACAGGCGCAGGAAAAAACTGTAGAAGTTGCCGT
CCCAACTACAGCCCCCTATACGGTTAGCATAATGCGGGAACTGCGCGAAG
AGAAGTCCGACGAGGATCATAGGGAAAGCTTTCTAAGTGCCTATCAAACA
CCCATGTGTAGGAACTACAATAGCCACCTCGATGTCCACGCCACAATCTG
CCCGTTTGATCTGATGGGTCGCTGTGAGGATGCGGACTGCTCCTACCTTC
ATTTAGCCCGCCCCGACTCCCAAAACGAGCTGCCAAAGACAAGCCCTCTC
TCAATAACTAACAAATAAAAGCTTTCTAGACCAT
BS25238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4294-RB | 4002 | CG4294-PB | 1..4002 | 17..4018 | 20010 | 100 | Plus |
| CG4294-RC | 3996 | CG4294-PC | 1..3996 | 17..4018 | 19885 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4294-RB | 4704 | CG4294-RB | 105..4106 | 17..4018 | 20010 | 100 | Plus |
| CG4294-RC | 4307 | CG4294-RC | 105..4100 | 17..4018 | 19885 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22602725..22605178 | 2771..318 | 12270 | 100 | Minus |
| 2R | 25286936 | 2R | 22602288..22602669 | 3151..2770 | 1910 | 100 | Minus |
| 2R | 25286936 | 2R | 22605263..22605563 | 317..17 | 1505 | 100 | Minus |
| 2R | 25286936 | 2R | 22601529..22601820 | 3716..3425 | 1460 | 100 | Minus |
| 2R | 25286936 | 2R | 22601946..22602227 | 3431..3150 | 1410 | 100 | Minus |
| 2R | 25286936 | 2R | 22601213..22601370 | 3873..3716 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 22601003..22601149 | 4018..3872 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:11:27 has no hits.
BS25238.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 09:59:31 Download gff for
BS25238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4294-RB | 73..4065 | 17..4009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:34 Download gff for
BS25238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4294-RB | 105..4097 | 17..4009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:22 Download gff for
BS25238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4294-RB | 105..4097 | 17..4009 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:22 Download gff for
BS25238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22601213..22601370 | 3716..3873 | 100 | <- | Minus |
| 2R | 22601530..22601815 | 3430..3715 | 100 | <- | Minus |
| 2R | 22601948..22602226 | 3151..3429 | 100 | <- | Minus |
| 2R | 22601012..22601147 | 3874..4009 | 100 | <- | Minus |
| 2R | 22602289..22602668 | 2771..3150 | 100 | <- | Minus |
| 2R | 22602726..22605178 | 318..2770 | 100 | <- | Minus |
| 2R | 22605263..22605563 | 17..317 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:34 Download gff for
BS25238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18489453..18489731 | 3151..3429 | 100 | <- | Minus |
| arm_2R | 18488517..18488652 | 3874..4009 | 100 | <- | Minus |
| arm_2R | 18488718..18488875 | 3716..3873 | 100 | <- | Minus |
| arm_2R | 18489035..18489320 | 3430..3715 | 100 | <- | Minus |
| arm_2R | 18489794..18490173 | 2771..3150 | 100 | <- | Minus |
| arm_2R | 18490231..18492683 | 318..2770 | 100 | <- | Minus |
| arm_2R | 18492768..18493068 | 17..317 | 100 | | Minus |
BS25238.pep Sequence
Translation from 16 to 4017
> BS25238.pep
MVVGTATMPPEILQVPAIKKEHSELLENPANSKPCDPDETAEEGVVEEDR
EEGEIVDEFELIISSEDDEFKLRARIHQLEENNKDVERMDMLSANLAHQY
NYPKPVPRLPPQQQKSPVYILSDVSSQSEDEFEAQRKYRKQKGRRLELGK
RHNHSSLRDYRRNPFARRHKHSSLPPPVTTQRRRQDYHHNQLNNRYQRRH
QQYFDLEDSLESDGELGEYDVTCDNDDDELDLQKLELSRDKLRVALAREK
REFVGQYKNSLSERLQYRVHKSPSPKHSEEYQQEEQELPLSPVQPISDDG
EEEPQEQNVPQREDPAELKLRLIALKSAILKKHLARKKRDAERAYSPTDM
INRVHPAISNDDDIDDLMEISPAASPDREQSPPRYSIDYAVDTKPVDMDL
ADTDSDDQKKEMWNSWSNNWNSIDNAGGSWRCFMPNNLPPVSVPIVIDED
DELDLNTDNRIRREIMAYDDDEVPPPPPPFHIPQMHLEDEDARDAMHLVD
QHSNHSYNSELQTVSMENSQMHINSFDQFQPNSSDDEAGALRAILLSNLR
ANRPPPPPPRTPPPIDWELNTAPGQVQVPEPVAAPTPSYVPGSVTQPKED
STQDNDSDDPEELRLLLLSSIATKKRTNGPNPKSGLRPEILKNALKRFQP
SELPIKDERSQDQHPILDECNVLKTEKEIEKETAVEPVALETATINVESV
EVPQPLVQEQKPSFSPTKIIKIVKPNKVINKKTTKRKLLAIEGSGLSIKR
PNVLMDKEPSAPLRSQEVIASSTRLITTVDPASIKVNKLIISLAEESPAS
DDDLELSSSFAYVNTDIASPLSLAMGSFSGSTTRSNTPISEIAETVPNAN
INLRRTVINDYFEKRIDDFLKQARSKAPTMNSPEAAKENTSEKPQVKEEP
PKSVTSPKTQPPPKTTPVAVRHLPVASQKEYLRLVERMQMLERKKVRAAK
TAAPVAKSKAPTVDKPTPKNNASLSTANIVNNPAKKDLGSTTSSPMTNDK
ATSAVQKPQVKTANLKSAKTKPKQNHQMSKETRLKAFENSFVKIGGSMLI
NLDKSLELVEEAKKSKAIRLRCSQRLKELYDEMQTLRQAVKQEELKLSKI
QPEIQASHEIIISLKQKRHKLHTAAMDLGRGLRGDDYRLIDEGKAAITAK
STQLTKEIRLYNSIVNYADLTKLTDAEISQQNTVMPTEPKTVQHEESREN
EPLTDPQVKNQSETTETEPAIGKQPETETDPPDEQAQEKTVEVAVPTTAP
YTVSIMRELREEKSDEDHRESFLSAYQTPMCRNYNSHLDVHATICPFDLM
GRCEDADCSYLHLARPDSQNELPKTSPLSITNK*
BS25238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4294-PB | 1333 | CG4294-PB | 1..1333 | 1..1333 | 6878 | 100 | Plus |
| CG4294-PC | 1331 | CG4294-PC | 1..1331 | 1..1333 | 6855 | 99.8 | Plus |
