BS25268.complete Sequence
1016 bp assembled on 2011-06-27
GenBank Submission: KX801163
> BS25268.complete
GAAGTTATCAGTCGACATGGACTCCGACGCCGCACAAAAGACCTGGGAGC
TGGAGAACAACATCCAGACGTTGCCCAGTTGTGACGAGATCTTTCGCTAC
GACGCCGAACAGCAGCGGCAGATCATCGATGCGAAGCCCTGGGAGAAAGA
TCCCCACTTCTTTAAGGACATTAAGATCTCGGCTCTGGCGCTCCTAAAGA
TGGTGATGCACGCTCGCTCTGGCGGTACTTTGGAGGTGATGGGTCTAATG
CTTGGCAAGGTAGAGGACAACACAATGATTGTCATGGATGCATTTGCACT
GCCAGTGGAGGGCACTGAAACCCGCGTCAATGCCCAGGCACAAGCGTACG
AGTACATGACCGCCTACATGGAAGCGGCCAAAGAGGTGGGACGCATGGAA
CACGCCGTGGGCTGGTATCACAGCCATCCCGGTTACGGTTGCTGGTTGTC
CGGCATCGATGTGTCCACCCAGATGCTCAACCAGACATACCAGGAGCCAT
TCGTGGCCATTGTGGTTGATCCGGTGCGCACTGTTTCCGCTGGCAAGGTG
TGTCTGGGTGCATTCCGCACGTATCCAAAAGGTTATAAGCCACCAAACGA
GGAGCCCTCGGAGTATCAGACCATCCCGCTGAATAAGATCGAAGACTTTG
GAGTCCACTGCAAGCAGTACTATCCCTTGGAAATTAGCTACTTCAAGTCT
GCTCTGGACCGCAGGCTCCTCGACTCTCTGTGGAACAAATACTGGGTAAA
CACACTGGGCAGCTCGGGTCTGCTCACCAACACAGAGTACACCACCGGTC
AGATCATGGATCTCTCCGAGAAGCTGGAGCAGAGTGAGAACTTTTTAGGT
CGCGGAACCGATGTCAATGAGAAGCGTTCGGAGGATAAGCTGTCCAAGGC
CACCCGAGACTGCAGCCGCTCCACCATTGAACTGATACACGGCTTGATGG
CTCAGATTGTTAAGGACAAACTTTTCAACAAGGTCGGACTGGGCAAATAG
AAGCTTTCTAGACCAT
BS25268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN5-RA | 984 | CG14884-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
| CSN5-RB | 978 | CG14884-PB | 1..978 | 17..1000 | 4795 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN5-RA | 1196 | CG14884-RA | 81..1064 | 17..1000 | 4920 | 100 | Plus |
| CSN5-RB | 1190 | CG14884-RB | 81..1058 | 17..1000 | 4795 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16470492..16471070 | 277..855 | 2895 | 100 | Plus |
| 3R | 32079331 | 3R | 16470179..16470439 | 17..277 | 1305 | 100 | Plus |
| 3R | 32079331 | 3R | 16471128..16471274 | 854..1000 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:57:21 has no hits.
BS25268.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:21 Download gff for
BS25268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 79..1056 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:34 Download gff for
BS25268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 81..1058 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:45 Download gff for
BS25268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN5-RA | 81..1058 | 17..994 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:45 Download gff for
BS25268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16470179..16470439 | 17..277 | 100 | -> | Plus |
| 3R | 16470493..16471069 | 278..854 | 100 | -> | Plus |
| 3R | 16471129..16471268 | 855..994 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:34 Download gff for
BS25268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12295901..12296161 | 17..277 | 100 | -> | Plus |
| arm_3R | 12296215..12296791 | 278..854 | 100 | -> | Plus |
| arm_3R | 12296851..12296990 | 855..994 | 100 | | Plus |
BS25268.pep Sequence
Translation from 16 to 999
> BS25268.pep
MDSDAAQKTWELENNIQTLPSCDEIFRYDAEQQRQIIDAKPWEKDPHFFK
DIKISALALLKMVMHARSGGTLEVMGLMLGKVEDNTMIVMDAFALPVEGT
ETRVNAQAQAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVS
TQMLNQTYQEPFVAIVVDPVRTVSAGKVCLGAFRTYPKGYKPPNEEPSEY
QTIPLNKIEDFGVHCKQYYPLEISYFKSALDRRLLDSLWNKYWVNTLGSS
GLLTNTEYTTGQIMDLSEKLEQSENFLGRGTDVNEKRSEDKLSKATRDCS
RSTIELIHGLMAQIVKDKLFNKVGLGK*
BS25268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN5-PA | 327 | CG14884-PA | 1..327 | 1..327 | 1725 | 100 | Plus |
| CSN5-PB | 325 | CG14884-PB | 1..325 | 1..327 | 1701 | 99.4 | Plus |
| Rpn11-PA | 308 | CG18174-PA | 27..256 | 50..273 | 376 | 38 | Plus |
