BS25277.complete Sequence
1778 bp assembled on 2012-04-25
GenBank Submission: KX804022
> BS25277.complete
GAAGTTATCAGTCGACATGTCTTCAAAACTGATATCATCGTCGTTCCACA
GTTCGCCCCTCAGCGACTGTTTCAAAGTGGGCGAGTTCGAGCGACGTCTG
GATGCTCTATTAGCCGACCTGCAAAACAGTGTGCCAGGCCAGCCGCAGCA
ACCTCAGCCGCAATATGGAACTGTCCAGCCCAAACATCAAGCTCTGCAGC
AACAGCAGTTTGTGGACAACACTCCAGGTTATGGAAGTCTCAGGGGCAAA
GCCCAGCCCCAGGTGTATCAAGAGCACTACAGCGTAGAGACACGCTCCCC
AACGGCTGGACATGATTTTAATGGCTCCTCAACGACTCCGGGATACGCTA
ACCAGGGATCGTTGCCACGTCAGGCGGCGGGTGCAAGCACAGGACTCTCA
GAACTGGACTCCTTGCTGCAGGATCTGCAGAAAATCGATGTACCGGTCAA
CTACAGTACTCCAGTCTCGAAATACAATACGATGAATAGTTATGCCACCG
TGGAGGAGCGTCCTTCAGTGGACAGCCTGCTGAAAGAACTGGACAATGCT
CACATCTATGCTGTTCCTAACGGATCTGCGCATAAATCTCCGACGCCGGG
ACGACATGTCACCATCACCGTTCGGGAAACGAAGACGGAGAAGTTGACGG
GTCCGGATGGACCAGTTGGCACTGTCGAGGAGCAAATTGTGCAGCAGAAG
GATTCTTATACGCCCAATCATGCTGTTCCGGGACAACAGGTGCATCAGGC
CTATACGTCGCAGGCCACCAAGGAACTGGATGATCTGATGGCTTCACTTT
CCGACTTCAAGGTTAGCAACGGAACAAACGGCATCGGAAACGGCAGTCAT
CCGCAACAGCACTCGTCGACAGTGCAGCACCAGACGGTAACCGACTACGC
CAGACCAAACAAGGGTAGCCAGCAGGCACATCTCACCCAGACGATCGAGG
AGACGACCATCGTCGAGGACAGTCGCGAGGATCAGTTGGATTCTATGCTA
GGCAATCTACAGGCCAATATGAGTCGCCAAGGAGTCAATACCGTGCAGAA
GGGCTGCTGCAATGCCTGCGAGAAGCCCATTGTGGGCCAGGTGATCACAG
CCCTGGGCAAGACATGGCATCCGGAGCACTTCACGTGCAACCACTGCAGC
CAGGAGTTGGGCACCCGCAATTTCTTCGAGCGCGACGGCTTCCCGTACTG
CGAGCCGGACTACCACAATCTGTTCAGCCCGCGCTGCGCCTACTGCAACG
GCGCCATTCTGGACAAGTGCGTAACGGCGCTGGACAAGACCTGGCACACG
GAGCACTTCTTCTGCGCCCAGTGCGGCCAGCAGTTCGGCGAGGAGGGATT
CCATGAGCGTGACGGCAAGCCGTACTGTCGCAACGACTACTTCGAGATGT
TTGCCCCGAAGTGCAATGGCTGCAACCGCGCCATTATGGAGAACTACATC
TCGGCGCTGAACTCGCAGTGGCATCCGGATTGCTTCGTCTGCAGGGACTG
CCGACAGCCCTTCCAAGGAGGATCCTTCTTTGATCACGAGGGACTGCCGT
ACTGCGAGACGCACTACCATGCCAAGCGAGGATCCCTGTGCGCCGGGTGT
TCCAAACCCATCACCGGACGCTGCATCACGGCCATGTTCAAGAAATTCCA
CCCGGAACACTTCGTCTGCGCCTTCTGCCTGAAGCAGTTGAATAAGGGCA
CTTTCAAGGAGCAAAAGGACAAGCCATACTGCCACACCTGCTTCGACAAG
ATATTCGGATGAAAGCTTTCTAGACCAT
BS25277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-RK | 1746 | CG31794-PK | 1..1746 | 17..1762 | 8730 | 100 | Plus |
| Pax-RJ | 1746 | CG31794-PJ | 1..1746 | 17..1762 | 8730 | 100 | Plus |
| Pax-RA | 1746 | CG31794-PA | 1..1746 | 17..1762 | 8730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-RK | 2255 | CG31794-RK | 157..1903 | 17..1763 | 8735 | 100 | Plus |
| Pax-RJ | 2253 | CG31794-RJ | 183..1929 | 17..1763 | 8735 | 100 | Plus |
| Pax-RA | 2235 | CG31794-RA | 165..1911 | 17..1763 | 8735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19403998..19404688 | 1496..806 | 3440 | 99.9 | Minus |
| 2L | 23513712 | 2L | 19401105..19401373 | 1763..1495 | 1345 | 100 | Minus |
| 2L | 23513712 | 2L | 19410248..19410414 | 431..265 | 835 | 100 | Minus |
| 2L | 23513712 | 2L | 19410480..19410644 | 265..101 | 825 | 100 | Minus |
| 2L | 23513712 | 2L | 19409402..19409552 | 813..663 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 19409769..19409910 | 573..432 | 710 | 100 | Minus |
| 2L | 23513712 | 2L | 19409612..19409704 | 665..573 | 465 | 100 | Minus |
| 2L | 23513712 | 2L | 19411537..19411621 | 101..17 | 425 | 100 | Minus |
| 2L | 23513712 | 2L | 21199830..21199885 | 1147..1092 | 190 | 89.3 | Minus |
| 2L | 23513712 | 2L | 21202145..21202200 | 1147..1092 | 190 | 89.3 | Minus |
Blast to na_te.dros performed 2014-11-28 11:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6814 | 98..208 | 122 | 62.6 | Plus |
BS25277.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:03 Download gff for
BS25277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RA | 146..1890 | 17..1761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:47 Download gff for
BS25277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RA | 165..1909 | 17..1761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:09 Download gff for
BS25277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RA | 165..1909 | 17..1761 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:09 Download gff for
BS25277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19401107..19401372 | 1496..1761 | 100 | <- | Minus |
| 2L | 19403999..19404682 | 812..1495 | 100 | <- | Minus |
| 2L | 19409404..19409549 | 666..811 | 100 | <- | Minus |
| 2L | 19409612..19409703 | 574..665 | 100 | <- | Minus |
| 2L | 19409769..19409910 | 432..573 | 100 | <- | Minus |
| 2L | 19410248..19410413 | 266..431 | 100 | <- | Minus |
| 2L | 19410480..19410643 | 102..265 | 100 | <- | Minus |
| 2L | 19411537..19411621 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:47 Download gff for
BS25277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19409612..19409703 | 574..665 | 100 | <- | Minus |
| arm_2L | 19409769..19409910 | 432..573 | 100 | <- | Minus |
| arm_2L | 19410248..19410413 | 266..431 | 100 | <- | Minus |
| arm_2L | 19410480..19410643 | 102..265 | 100 | <- | Minus |
| arm_2L | 19411537..19411621 | 17..101 | 100 | | Minus |
| arm_2L | 19401107..19401372 | 1496..1761 | 100 | <- | Minus |
| arm_2L | 19403999..19404682 | 812..1495 | 100 | <- | Minus |
| arm_2L | 19409404..19409549 | 666..811 | 100 | <- | Minus |
BS25277.pep Sequence
Translation from 16 to 1761
> BS25277.pep
MSSKLISSSFHSSPLSDCFKVGEFERRLDALLADLQNSVPGQPQQPQPQY
GTVQPKHQALQQQQFVDNTPGYGSLRGKAQPQVYQEHYSVETRSPTAGHD
FNGSSTTPGYANQGSLPRQAAGASTGLSELDSLLQDLQKIDVPVNYSTPV
SKYNTMNSYATVEERPSVDSLLKELDNAHIYAVPNGSAHKSPTPGRHVTI
TVRETKTEKLTGPDGPVGTVEEQIVQQKDSYTPNHAVPGQQVHQAYTSQA
TKELDDLMASLSDFKVSNGTNGIGNGSHPQQHSSTVQHQTVTDYARPNKG
SQQAHLTQTIEETTIVEDSREDQLDSMLGNLQANMSRQGVNTVQKGCCNA
CEKPIVGQVITALGKTWHPEHFTCNHCSQELGTRNFFERDGFPYCEPDYH
NLFSPRCAYCNGAILDKCVTALDKTWHTEHFFCAQCGQQFGEEGFHERDG
KPYCRNDYFEMFAPKCNGCNRAIMENYISALNSQWHPDCFVCRDCRQPFQ
GGSFFDHEGLPYCETHYHAKRGSLCAGCSKPITGRCITAMFKKFHPEHFV
CAFCLKQLNKGTFKEQKDKPYCHTCFDKIFG*
BS25277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-PK | 581 | CG31794-PK | 1..581 | 1..581 | 3194 | 100 | Plus |
| Pax-PJ | 581 | CG31794-PJ | 1..581 | 1..581 | 3194 | 100 | Plus |
| Pax-PA | 581 | CG31794-PA | 1..581 | 1..581 | 3194 | 100 | Plus |
| Pax-PH | 563 | CG31794-PH | 5..563 | 22..581 | 3058 | 99.1 | Plus |
| Pax-PC | 557 | CG31794-PC | 4..557 | 28..581 | 3057 | 100 | Plus |
