BS25326.complete Sequence
2249 bp assembled on 2011-08-05
GenBank Submission: KX805859
> BS25326.complete
GAAGTTATCAGTCGACATGTCCCAGAATCATGCCTCTACGGAAGAAGTCT
TGCACGTGGTGGAGGCCATCGAGGCAGGTGAAAAATCCGAGGTAGACACT
GTTCCAGTGGTTGTGCCACCAGAATCAACAGCTGAGCCCGAAGTGATCTC
CAAGCCAGAGGAGGGCAACCAACCAGCTGGCGATGAGCCGCGGGAGGAGA
AGCCACAGATCGAATCTGGCGCAATTACCGCCCAGGTGGCGACGGAGGAG
GGACAGGAAGCGGAAACCACCGAACACGTAGCTATCGAAGCAACTGAGCT
TGGTAATGAAGTGCAGCAAACGGAAGCATCAGATGAACTATCGCCAGAAG
AAAAGAAACTGAAGCTGAAGAAGGAGCGAAAGGAGCGTTTGAAGAATTTC
GCAACCACTCGCTTTGCACCGACAGCAATCGAGAGCCCAGTTCATTTTAC
ACCGGAATATATGGAAGAGATCAGGGATAATGAGGTAGAGGAAGAAGAGC
AGGAACAGGTAGTCACCTTTGATGAGCCCACCATTGGAGACGGGGAGTCT
GTGTCCTCGTCAGTTCTCACCGACGACTCAGAAGACTATCCATTCCATCC
ACCCAAATTGGTCAGCCTATTCCCCACCTATGGCTTCTCAGATGGCCCCG
CTGATAGAAACATATTCCAATCGGATGTGAAGTATGAGGACATTGATTAT
TCGGTTAGTTTGACTGGCATAAGCATTGTATCGACAAGAACGTTAAAAAC
CGAATGCGATCCGGATTCAGTCCAGTTAAAAACCAACTTTCTGAGGGACT
TTGATGTGCCCAGTCTGTCGGACATATCGGAGGAGCACGACGAGTCTTCA
CAGTCATTGGACGCTGGGTCGGTGATAAGCGTCCAGCAAGATCATGGCTT
CTTTGCGGATCCAACGTCGAACATGGACTCCGGTTCCAGCTCGTCGTCGG
AATCGATTGGAGACGTGGACAAAGAGCAACAGGCTGAGGAGGCGGCTCCA
GAAAGTGAGGTCGACTCTTTCGATGTCTCCGACATACCGGAATTCGATGA
AATTCCAGTCGTAAAAAGAGTGGAACAAAACCAAGATTCTATCGATGCAT
TCAGCACATTGTCAAAGGTTGCCTTTGCAGTTCCCGAGGTCCGAGACGAT
CCAGTCATTTCGCATGCTCTCGAGATCAAGGCGGTAGTCCGTGAACTACT
GTACGACCTTTTCGAGGAGACGGCTAGTTTATCGGACATCCACAACAAGG
ACAATAAAATTCGGGCGAAATTGGACAAGAATAAGCTATTGACCGAGCTT
GATAAAGTCATCACTACATATTTGTATGAGAAGTACACCAACGAAATGGT
GGGCAATCGACTTGTGGAATATTATAAACGCAATCGCAATGCCCGTGTCT
TCGCCACACTCTCGCCGGAAAATGAAAAACGATTCCACTCCCGATACATG
CATGCCCTGGCCCTGCTTGACAGTCTGAAGTATCGACTGGATGTGGCCAA
GCACAAGCACGCCATCCAGATGAACAGAGTGATCCTGGATCTCCACTCCG
CCCAGAGTGTCGCCTCGATCACTGAGGAACGCTTGGAGCACCTGTTCCGG
GAACACCTGGTCCGGCCCGAATCGGATAATCTGCGACGTTTAGTTGATCG
CGAACTGAGAATGATGACAGCCAAGCGGAACGAGATCAGCGACTCCAGAC
TGTTTCTCATCACAAGAAAGCACACCTTAGGTCGCATTATGGGGAAAATC
AAGGAACTTGACACACTGAGTGAGACCTTGAGTATCGAAGATTTCTTGTC
CGTGCAAAATAATGTGTTTGCCCTGCAAAAGAAAATCGAGGAACGCAATA
CCGATCTGAAGAGGATGCGAACCCAGTTCCTCATGGACGTTCATCTCACG
CGACACAATCGAGAAAAGGCGCTGGCTCTGGCGGAAAATTTTGAGCTAAG
TAAAATCCGGTTGAAGAATGCCATGAAAAATCAGACAGACCTGCGTAGAC
GTCTCTACGAAGTGAAATTGGAGCGGAAGAAGATGCGTCAGCAGTCAAGG
GATATGACCTTCCACGGCGGCATCCTGGCGATGCCCTCGCTGATGTACGA
CTACGACAACACTGTGGAGCGATTGAAGGAGAAGCGGGAAACGGTGGCCA
AGCTCAGGGAAACCCTAAAGTCACTCCAACGTCGGCTCAGCTATGTAGAG
GGAAGAAGTATATAGAAGCTTTCTAGACCATTCGTTTGGCGCTTAAGGG
BS25326.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4714-RA | 2199 | CG4714-PA | 1..2199 | 17..2215 | 10995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4714-RA | 2355 | CG4714-RA | 113..2312 | 17..2216 | 11000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13252498..13254225 | 1744..17 | 8640 | 100 | Minus |
| 2R | 25286936 | 2R | 13251895..13252270 | 2216..1841 | 1880 | 100 | Minus |
| 2R | 25286936 | 2R | 13252327..13252424 | 1841..1744 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:17:09 has no hits.
BS25326.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 10:05:31 Download gff for
BS25326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4714-RA | 113..2318 | 17..2225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:11 Download gff for
BS25326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4714-RA | 113..2318 | 17..2225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:36 Download gff for
BS25326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4714-RA | 113..2318 | 17..2225 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:36 Download gff for
BS25326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13251889..13252269 | 1842..2225 | 98 | <- | Minus |
| 2R | 13252327..13252423 | 1745..1841 | 100 | <- | Minus |
| 2R | 13252498..13254225 | 17..1744 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:11 Download gff for
BS25326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9139394..9139774 | 1842..2225 | 98 | <- | Minus |
| arm_2R | 9139832..9139928 | 1745..1841 | 100 | <- | Minus |
| arm_2R | 9140003..9141730 | 17..1744 | 100 | | Minus |
BS25326.pep Sequence
Translation from 16 to 2214
> BS25326.pep
MSQNHASTEEVLHVVEAIEAGEKSEVDTVPVVVPPESTAEPEVISKPEEG
NQPAGDEPREEKPQIESGAITAQVATEEGQEAETTEHVAIEATELGNEVQ
QTEASDELSPEEKKLKLKKERKERLKNFATTRFAPTAIESPVHFTPEYME
EIRDNEVEEEEQEQVVTFDEPTIGDGESVSSSVLTDDSEDYPFHPPKLVS
LFPTYGFSDGPADRNIFQSDVKYEDIDYSVSLTGISIVSTRTLKTECDPD
SVQLKTNFLRDFDVPSLSDISEEHDESSQSLDAGSVISVQQDHGFFADPT
SNMDSGSSSSSESIGDVDKEQQAEEAAPESEVDSFDVSDIPEFDEIPVVK
RVEQNQDSIDAFSTLSKVAFAVPEVRDDPVISHALEIKAVVRELLYDLFE
ETASLSDIHNKDNKIRAKLDKNKLLTELDKVITTYLYEKYTNEMVGNRLV
EYYKRNRNARVFATLSPENEKRFHSRYMHALALLDSLKYRLDVAKHKHAI
QMNRVILDLHSAQSVASITEERLEHLFREHLVRPESDNLRRLVDRELRMM
TAKRNEISDSRLFLITRKHTLGRIMGKIKELDTLSETLSIEDFLSVQNNV
FALQKKIEERNTDLKRMRTQFLMDVHLTRHNREKALALAENFELSKIRLK
NAMKNQTDLRRRLYEVKLERKKMRQQSRDMTFHGGILAMPSLMYDYDNTV
ERLKEKRETVAKLRETLKSLQRRLSYVEGRSI*
BS25326.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4714-PA | 732 | CG4714-PA | 1..732 | 1..732 | 3680 | 100 | Plus |
| CG4712-PB | 674 | CG4712-PB | 49..661 | 104..724 | 715 | 32.2 | Plus |
| CG4712-PA | 647 | CG4712-PA | 31..634 | 113..724 | 703 | 32.2 | Plus |
| CG31231-PA | 679 | CG31231-PA | 20..665 | 53..728 | 504 | 25.7 | Plus |
| CG4970-PB | 690 | CG4970-PB | 326..674 | 381..728 | 370 | 29.2 | Plus |
