BS25339.complete Sequence
2030 bp assembled on 2011-08-31
GenBank Submission: KX806493
> BS25339.complete
GAAGTTATCAGTCGACATGTTCCGATTTGGCAAGCTCCATCGCAGTCTGT
CTAAGGTGGCCAAAAAGGGACAGACAGCTGTGTATTCCCAGCGCCGTTGC
ATTCAGGCGAGGAGTTTCTTGCCGGGATTGGCTAGTAGGACGGCTGGAAC
GCCCTCTGCGACGGCCCAGGTAACCGGTGGAAACAAGCAGCACGTACACC
CCCATGGTAATTCCGTTAACAGTGGCCACGAAGAACATAACACCCGCTGG
CCGAGGAAAGTCTTTAGTGGCATCCAGCCGACGGGTTCCCTGCATCTGGG
TAATTATCTCGGCGCCGTGCGCAAATGGGTGCAGCTGCAGAATGCTCGTG
ACGATGTCACCGTGTGTATTGTGGATTTGCACTCTATTACCATGCCCCAC
AATCCGCCGCTTCTGCGAGAGAACATCTTCACCATGGCCGCCACGTTGTT
GGCATGTGGCATCGATCCCACCAAGAGCACCCTCTTTGTCCAGTCCGCCG
TTGCCGAGCACGCCGAGTTCAATTGGATCCTTAGCTCCTTGACCACCATG
CCGCGATTGGCTCAACTGCCGCAGTTCCGAGAGAAGTCCCGTCTTCTAAA
GGATGTCCCTCTGGGATTGTACGTTTACCCGGTTCTCCAAGCAGCCGACA
TTATGCTTTACAAGTCCACTCATGTTCCTGTGGGCGCTGACCAGATTCAG
CACATTCAGCTGGCCCAGCACTTGGCCAGAATTTATAACGGTCGCTATGG
CGAGACTTTCCCTGTTTGCACCGCCATCATTGAGGATGGTGATGCCTCCC
GTGTGCTGTCCCTGCGAGATCCCTCCAAAAAGATGTCTAAATCGGAAGCG
AATCCCAAGGCCACCATCAACTTGTGTGACTCGCCCGACTTGATTACGCA
GAAGATAAAGAAAGCCGTCACAGACTTTACATCGGACATTACTTATAATC
CTGGCAAGCGTGCTGGCGTCAGCAATCTGGTCAACATCCATGCCCAGGTC
ACGGGACAGAGCATTAAGACAGTGGTGAACGAGGCCGCCACTTTGGACAC
GGCAAAGTATAAGGACCGTGTGGCGGAGGCTGTGGTCGAGCACTTGCGTC
CGATCCGAGAACAGATACACCATCACATGACTAAGCGCAACGAGATGATC
TACTTGCTGGAAGTGGGTGCAGAAAAGGCACGTCAGCAGGCACGCCAAAC
GTTGAACGATGTTAAACAGCGCCTAGGACTAGGAACCAGTGCCAACATTC
CGGCTGCGGTGCATGTGGCTCCACTTCTGCCCGCACCCGATATTTCCAAA
ACCTCAGCAAGCAGGCGAATGTCCAAGGACTTCGACGGGAATGTCCACGA
GCGTCACGAACGGATGTACGGATTCGGAGATCAGCCAAGCGGAGGAGCTG
GTCAGTCAGCCACCGGCGAGGTGGCGGATATGCCTCAGGCCGTTGTACCG
CGGGTGATCCGTCGGGCGCCCATCGTTCCCACTCAGTCTATGCGCGTAGA
GAAACAACTAGGTAGCACTCGAACTCGGCACGTATTCCAGATGGACACCT
GCAATGCTCCGCATATAGGGTTCAAACCGCCGCCAGGATTTTCGGCCAGC
ATGGTCACCGGTGCTCTAGCCAAGAACAAGCGCGCTACAGTTAAACCCGT
TACTGGCAACCTGGGCTTCGGCCAGCAATCGCAGGGTGGCTCTTACAAGC
ACAGCCAGAACGTGAATCCTAGTGCGGTATCCACCATTGCACGTGAAGTA
AACGCTGCTAAGAAGCAGGAGTTTACCTGCAACCCCGCTTTGTACGGCTC
TGCCTTAGAATCGCTTTCCAATTCAAGTCGCTCGAGCGAAAAGACTAACT
CTACGGCAGGAGACAGTGAGTTCATAATTGTCGCGAGCGAGGAGGAAGAG
CAGGCTGCTTCCTCTGAGGAGCAACGCGAAGAAGCTGAAGAGGAGGAGTC
CGGGGAACGTGAAAGGGAGAAAGGCGAGCGCAACGCCACTGAAGCTACCA
AAGTCGAGATTTAAAAGCTTTCTAGACCAT
BS25339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7441-RB | 1998 | CG7441-PB | 1..1998 | 17..2014 | 9990 | 100 | Plus |
| CG7441-RA | 1998 | CG7441-PA | 1..1998 | 17..2014 | 9990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7441-RB | 2213 | CG7441-RB | 154..2151 | 17..2014 | 9990 | 100 | Plus |
| CG7441-RA | 2477 | CG7441-RA | 154..2151 | 17..2014 | 9990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17850777..17852127 | 664..2014 | 6755 | 100 | Plus |
| 3L | 28110227 | 3L | 17850161..17850590 | 236..665 | 2150 | 100 | Plus |
| 3L | 28110227 | 3L | 17849880..17850098 | 17..235 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:26:43 has no hits.
BS25339.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-31 09:30:41 Download gff for
BS25339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7441-RA | 191..2181 | 22..2012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:02 Download gff for
BS25339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7441-RA | 159..2149 | 22..2012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:35 Download gff for
BS25339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7441-RA | 159..2149 | 22..2012 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:35 Download gff for
BS25339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17849885..17850098 | 22..235 | 100 | -> | Plus |
| 3L | 17850161..17850588 | 236..663 | 100 | -> | Plus |
| 3L | 17850777..17852125 | 664..2012 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:02 Download gff for
BS25339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17842985..17843198 | 22..235 | 100 | -> | Plus |
| arm_3L | 17843261..17843688 | 236..663 | 100 | -> | Plus |
| arm_3L | 17843877..17845225 | 664..2012 | 100 | | Plus |
BS25339.pep Sequence
Translation from 16 to 2013
> BS25339.pep
MFRFGKLHRSLSKVAKKGQTAVYSQRRCIQARSFLPGLASRTAGTPSATA
QVTGGNKQHVHPHGNSVNSGHEEHNTRWPRKVFSGIQPTGSLHLGNYLGA
VRKWVQLQNARDDVTVCIVDLHSITMPHNPPLLRENIFTMAATLLACGID
PTKSTLFVQSAVAEHAEFNWILSSLTTMPRLAQLPQFREKSRLLKDVPLG
LYVYPVLQAADIMLYKSTHVPVGADQIQHIQLAQHLARIYNGRYGETFPV
CTAIIEDGDASRVLSLRDPSKKMSKSEANPKATINLCDSPDLITQKIKKA
VTDFTSDITYNPGKRAGVSNLVNIHAQVTGQSIKTVVNEAATLDTAKYKD
RVAEAVVEHLRPIREQIHHHMTKRNEMIYLLEVGAEKARQQARQTLNDVK
QRLGLGTSANIPAAVHVAPLLPAPDISKTSASRRMSKDFDGNVHERHERM
YGFGDQPSGGAGQSATGEVADMPQAVVPRVIRRAPIVPTQSMRVEKQLGS
TRTRHVFQMDTCNAPHIGFKPPPGFSASMVTGALAKNKRATVKPVTGNLG
FGQQSQGGSYKHSQNVNPSAVSTIAREVNAAKKQEFTCNPALYGSALESL
SNSSRSSEKTNSTAGDSEFIIVASEEEEQAASSEEQREEAEEEESGERER
EKGERNATEATKVEI*
BS25339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7441-PB | 665 | CG7441-PB | 1..665 | 1..665 | 3411 | 100 | Plus |
| CG7441-PA | 665 | CG7441-PA | 1..665 | 1..665 | 3411 | 100 | Plus |
