BS25341.complete Sequence
2117 bp assembled on 2011-08-05
GenBank Submission: KX803599
> BS25341.complete
GAAGTTATCAGTCGACATGACGAAAGTTACTGAGGGAGAAATTTCACATG
GCGTTCAAGATGTCGGGAAATATTATCTGGATTTTCACCTTCTAGCCAAA
GGATTCGTCCGCCAGGACTCGGTACACGACTTTGTAAACAGCGATTCCGA
TGGAGACTTTATAGCACTGAGCGGCTCCAAATCGGAAGTGATCACTCTGG
AATTGAGCAGCAAGTTCATGGTCGTGGATCCCTTTCCGTATTTTGTGGCC
ATTTATGATTCCAACGCTGCGGAAACACGACCTCTGGACGTTTTGGCCAA
CAAAGTGGATCTGGTTGCCATATACGACAGCTGCGATGTCCTGGAGGCAC
AGCACTTGGCCCTGGACCCGGCATACACGGCTGTGTGCTCCGTTGCCGTG
CCACCAGCCAGACTAACAGCTGTTAAGCGAGCACCCAAGCTGGCAGCTAA
TGGAAATCTCCTCCTGGGCTCCCTCAACACTTATGGATCCTTGAGCCTAA
TAAACAAGTCCGCTGAGTACAATCGTTGGAACCCTGTGGAAGGACTAAAT
ATCGCTGAAACTCTGAGGGACACTCTGCTGCCTGAAGTGGACATCGCCAA
GATAAAAGACTTTAAGAGCTATCAAGAATATATTAATCCCGCCTGGATCA
CTATGTTTGCTTGGTTACCTGATGATGCAGATGCCACTGGCCAGCATGTT
TTGGTTCTGGGAACAGCCGCAGGAAGTTTGTGGTTGCTCACACTAAGCGC
CGATGTCAAAACTCTTTTAAGTCATCAAGAAACGAAAACCTCAATGGGTC
GTATCTGCCATATACAAGCTTTCAAGGACCTTCTACTGGTGGGCGATAGC
AACGGACTCATTCACCTGTACCAATTGCCAGCTAAGGGAAATACAGCTCT
CGCCTTAGTGAAGCCCTTGTGGGAGAAAGCCGATCGCATGGGTCTGCAAA
TGGCAGTGATCACTGAATGTCCCAGAATGGATTGCTATTATATAACCTGC
TGCAAGGCGGCGCACCTGCTGACCTGGAGCATGCCAAGAACGGGGAGCAC
AGACTGCCTGCAAGCTCGGATCTATGTCGGCGGAATGAAGATCACCGCTC
TCTGCAGCCTGGAGAACAGTAGCTACGTTGCAGGAACCGCTGGAAGCTGT
TTGTCTTGCGTACAAATTATCCACGAGAATAATCAGCTTAGCCTGCAGAT
GCAATCGATAGCCATGGGTGTCCTTCAGGATTTCCAGGTGATGGGACTGT
GCACCAGTAGGCACAAGAACTTAATGACCCTGTTACTCTACCGCAACAAG
GAATATCTAAATGAAACTGTATCTCAAAAGAACCAGTTGGTTATGCAAGT
GCTCAAGGTGGGGAATCAGGATCCACTTGATCAGCTTGTCAGGCATCTGG
AATCCAATAAGCCCATGAATCACTATACCGATTTATTAGCTGGACTACGT
CTGCACGTTTTTGCCGAGGAGAATTGGCAAAAATTTATGGACTTTTGTCC
ATTAGATTCCATTGAATTTGCCGATACCGCCACTGAAGGTCAGCTGCAGC
AGCTGCAAATTAAATTTCATGTTCTTCAAAACGTGATTCGCCTGCAATCG
AGCCACCTCCAGCTGACAGTTCACATCCAAAAGTCCCGGGATGAACTGCA
GCTGCTCCTTGCGATGCTGAATATCACACACATAAGACTGAGGCTCCAGT
TTATTGGGTCATTAAGTAAGAGATCACCATTCCAGGAGCAGGCGATAAAA
TGTATGTTCGAGGAGGCCCACAGACTGATAAATAAACTCAATGACGACTT
CACGGAAAACCATGCCCTAGGATCCACAGCAAGGACATTCGTTGAACAAA
TGGGCAACCATATTCAGCACTTGCACGAGATGCTAGGTATACCTGTGATA
TCTAATCCCCAGAAGCAACTTCATCGATGCAGTGTGTCCTTTGTGGAGAT
CTCCCTCAGCTTGGAGCGACGCTACTGCAGCCTCTGCAACCGCCAAATCC
TATTCGAGCTGGACAATCTGCAAGAACTCTACGAGTCGGGGAGACATCTG
ACATGTCCCGTTTGCCATGGAAGCTTTGCCACGGAAATGTTTAATGCATA
AAAGCTTTCTAGACCAT
BS25341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12182-RC | 2085 | CG12182-PC | 1..2085 | 17..2101 | 10425 | 100 | Plus |
| CG12182-RA | 2085 | CG12182-PA | 1..2085 | 17..2101 | 10425 | 100 | Plus |
| CG12182-RB | 1884 | CG12182-PB | 1..1884 | 218..2101 | 9420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12182-RC | 3493 | CG12182-RC | 257..2346 | 13..2102 | 10435 | 100 | Plus |
| CG12182-RA | 2368 | CG12182-RA | 257..2346 | 13..2102 | 10435 | 100 | Plus |
| CG12182-RB | 2508 | CG12182-RB | 455..2486 | 71..2102 | 10160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2597194..2599070 | 1948..72 | 9385 | 100 | Minus |
| 3L | 28110227 | 3L | 2596989..2597144 | 2102..1947 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 2599265..2599323 | 71..13 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:30:50 has no hits.
BS25341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 10:05:44 Download gff for
BS25341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12182-RA | 223..2305 | 17..2099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:45 Download gff for
BS25341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12182-RA | 261..2343 | 17..2099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:59 Download gff for
BS25341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12182-RA | 261..2343 | 17..2099 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:59 Download gff for
BS25341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2596992..2597142 | 1949..2099 | 100 | <- | Minus |
| 3L | 2597194..2599070 | 72..1948 | 100 | <- | Minus |
| 3L | 2599265..2599319 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:45 Download gff for
BS25341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2596992..2597142 | 1949..2099 | 100 | <- | Minus |
| arm_3L | 2597194..2599070 | 72..1948 | 100 | <- | Minus |
| arm_3L | 2599265..2599319 | 17..71 | 100 | | Minus |
BS25341.pep Sequence
Translation from 16 to 2100
> BS25341.pep
MTKVTEGEISHGVQDVGKYYLDFHLLAKGFVRQDSVHDFVNSDSDGDFIA
LSGSKSEVITLELSSKFMVVDPFPYFVAIYDSNAAETRPLDVLANKVDLV
AIYDSCDVLEAQHLALDPAYTAVCSVAVPPARLTAVKRAPKLAANGNLLL
GSLNTYGSLSLINKSAEYNRWNPVEGLNIAETLRDTLLPEVDIAKIKDFK
SYQEYINPAWITMFAWLPDDADATGQHVLVLGTAAGSLWLLTLSADVKTL
LSHQETKTSMGRICHIQAFKDLLLVGDSNGLIHLYQLPAKGNTALALVKP
LWEKADRMGLQMAVITECPRMDCYYITCCKAAHLLTWSMPRTGSTDCLQA
RIYVGGMKITALCSLENSSYVAGTAGSCLSCVQIIHENNQLSLQMQSIAM
GVLQDFQVMGLCTSRHKNLMTLLLYRNKEYLNETVSQKNQLVMQVLKVGN
QDPLDQLVRHLESNKPMNHYTDLLAGLRLHVFAEENWQKFMDFCPLDSIE
FADTATEGQLQQLQIKFHVLQNVIRLQSSHLQLTVHIQKSRDELQLLLAM
LNITHIRLRLQFIGSLSKRSPFQEQAIKCMFEEAHRLINKLNDDFTENHA
LGSTARTFVEQMGNHIQHLHEMLGIPVISNPQKQLHRCSVSFVEISLSLE
RRYCSLCNRQILFELDNLQELYESGRHLTCPVCHGSFATEMFNA*
BS25341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12182-PC | 694 | CG12182-PC | 1..694 | 1..694 | 3603 | 100 | Plus |
| CG12182-PA | 694 | CG12182-PA | 1..694 | 1..694 | 3603 | 100 | Plus |
| CG12182-PB | 627 | CG12182-PB | 1..627 | 68..694 | 3263 | 100 | Plus |
