BS25350.complete Sequence
1877 bp assembled on 2011-08-31
GenBank Submission: KX805385
> BS25350.complete
GAAGTTATCAGTCGACATGTTGGACTTTGTGGTGATATTCACCAAGGGCG
GAGTGGTGCTGTGGCACTCGAACGCGTCCGGTAACAGTTTCGCCTCCTGC
ATCAACAGCCTGATACGTGGCGTCATTCTGGAGGAGCGCAACACAGAGGC
CAAGTACTACGAGGAGGACCACCTGGCCGTGCAGTTTAAGCTGGACAACG
AACTGGACCTGGTCTATGCGGCCATTTTCCAGAAGGTGATCAAACTGAAC
TACCTAGATGGATTCCTGGCCGACATGCAGGCGGCCTTCAAGGAAAAGTA
CGGCGACATACGTCTGGGCGATGACTACGACTTCGATCGCGAATATCGAC
GCGTGCTCAGCGCCGCGGAGGAGGCGTCCGCCAAGCAAGTGAAAGCACCT
AAAACCATGCGCTCCTACAACGAGTCACAGAAATCGAAAAAGACCGTCGC
CTCGATGATACAGGACGACAAGAAGCCGGTGGAGAAGCGGGTGAACATCC
AGGAGGCCCCGCCACCATCCAAATCACAGCCGTCGTCGCCACCGACGGGC
TCCCCAATGGACAAGATCATCATGGAGAAACGGCGCAAGCTGCGCGAAAA
GCTCACGCCCACCAAGAAGACCTCGCCCAGTGATTCCAAGTCCAGCAAGC
CCGAGAAGGCCGGCAAGAAGCCACGCGTCTGGGATCTGGGCGGTAATTCC
AAGGATGCCGCTCTGCTCGATCGCTCCAGGGATTCGCCCGATGATGTGCA
GTACCAGAACATCAACAGCGAGCTGGTGGGCACAATGCAGGGCGTCATCC
GCGACTTGGATGTGGAGAGCGAGGACGAGGCTGACAACGAGGATGCATCC
TCTGAGGGGGAGGCCGAGGAGCAGGTGCAGTCAAAGAAGGGCAAGCGCGG
TGGCCTGCTATCCTACTTCAAGGGCATTGTAGGCGCCAAGACCATGTCGC
TGGCAGATTTGCAGCCGGCGCTGGAGAAGATGCGCGACCATCTGATATCG
AAGAACGTGGCCTCTGAGATAGCAGCTAAGCTGTGCGACTCGGTGGCCGC
CAGTTTGGATGGCAAGCAAATGGGCACATTCGACAGCATCGCCAGCCAGG
TGAAGGAGGCGCTCACGGAATCGCTGGTGAGGATACTATCGCCCAAACGG
CGCATCGACATCATACGCGATGCCCTCGAATCGAAGCGCAACGGCCGCCC
GTACACGATAATCTTCTGCGGTGTCAATGGTGTCGGCAAGTCCACCAATT
TGGCCAAGATCTGCTTTTGGCTGATCGAGAACGATTTCAACGTTCTGATC
GCCGCCTGCGATACGTTCCGAGCCGGTGCCGTCGAGCAGTTGCGCACACA
CACACGCCATCTGAACGCACTGCATCCGGCGGCCAAGCACGATGGACGCA
ACATGGTGCAGTTGTACGAGAAGGGTTACGGCAAGGATGCCGCCGGCATT
GCCATGGAGGCCATCAAGTTTGCCCACGATACGCGAGTGGATGTGGTGCT
TGTGGACACCGCCGGACGCATGCAGGATAACGAGCCGCTGATGCGTTCCC
TGTCCAAGCTAATCAAAGTGAACAATCCGGATCTGGTGCTATTCGTGGGC
GAGGCACTGGTGGGCAACGAAGCCGTCGACCAGCTGGTCAAGTTCAATCA
GTCGCTGGCCGACTACTCATCCAACGAGAACCCGCACATCATCGACGGCA
TAGTGTTGACCAAGTTCGATACCATCGATGACAAGGTGGGCGCCGCCATC
TCCATGACCTACATAACCGGCCAGCCAATTGTGTTCGTGGGCACGGGTCA
GACGTATGCCGACCTAAAGGCCATCAATGTGAACGCCGTGGTCAATTCCC
TGATGAAGTAAAAGCTTTCTAGACCAT
BS25350.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gtp-bp-RA | 1845 | CG2522-PA | 1..1845 | 17..1861 | 9225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gtp-bp-RA | 2056 | CG2522-RA | 114..1958 | 17..1861 | 9225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11126975..11128065 | 1861..771 | 5455 | 100 | Minus |
| X | 23542271 | X | 11128151..11128795 | 772..128 | 3210 | 99.8 | Minus |
| X | 23542271 | X | 11128857..11128974 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:27:48 has no hits.
BS25350.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-31 09:30:43 Download gff for
BS25350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gtp-bp-RA | 135..1972 | 22..1859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:32 Download gff for
BS25350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gtp-bp-RA | 119..1956 | 22..1859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:02 Download gff for
BS25350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gtp-bp-RA | 119..1956 | 22..1859 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:02 Download gff for
BS25350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11126977..11128063 | 773..1859 | 100 | <- | Minus |
| X | 11128151..11128789 | 134..772 | 100 | <- | Minus |
| X | 11128858..11128969 | 22..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:32 Download gff for
BS25350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11021010..11022096 | 773..1859 | 100 | <- | Minus |
| arm_X | 11022184..11022822 | 134..772 | 100 | <- | Minus |
| arm_X | 11022891..11023002 | 22..133 | 100 | | Minus |
BS25350.pep Sequence
Translation from 16 to 1860
> BS25350.pep
MLDFVVIFTKGGVVLWHSNASGNSFASCINSLIRGVILEERNTEAKYYEE
DHLAVQFKLDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRL
GDDYDFDREYRRVLSAAEEASAKQVKAPKTMRSYNESQKSKKTVASMIQD
DKKPVEKRVNIQEAPPPSKSQPSSPPTGSPMDKIIMEKRRKLREKLTPTK
KTSPSDSKSSKPEKAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNIN
SELVGTMQGVIRDLDVESEDEADNEDASSEGEAEEQVQSKKGKRGGLLSY
FKGIVGAKTMSLADLQPALEKMRDHLISKNVASEIAAKLCDSVAASLDGK
QMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRNGRPYTIIF
CGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLN
ALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAG
RMQDNEPLMRSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADY
SSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADL
KAINVNAVVNSLMK*
BS25350.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gtp-bp-PA | 614 | CG2522-PA | 1..614 | 1..614 | 3110 | 100 | Plus |
| Srp54k-PA | 508 | CG4659-PA | 28..295 | 315..613 | 221 | 22.7 | Plus |
