BS25353.complete Sequence
3038 bp assembled on 2011-08-05
GenBank Submission: KX803432
> BS25353.complete
GAAGTTATCAGTCGACATGTCTCACCTGACCGGCACCCGCGTGAGCACCT
TCAACGAGAGCTTCCTTAACGAAAATGAGCACGACTCGAATGCGGTGCTC
ATGGAACTGGACAAGGGACTGCGGAGCACCAAGCAGGGAATCCAGTGCGA
GGCGGTCGTCCGCTTTCCGCGCCTCTTCGAGAAGTATCCGTTTCCCATTC
TCATCAACTCGTCGTTCATTAAGCTGGCCGATTACTTTGTCAGCGGATCG
AATCTGCTGCGCTTCTGGGTGCTCCGTGTTTGCCAGCAGAGCGAGAATCA
TCTGGACAAGATCCTCAACATTGACAGCTTTGTGCGCTGTATCTTTGTGG
TGATGCACTCCAACGATCCGGTGGCGCGTGCTCTCCTCCTGCGCACCTTG
GGCGCCGTTTCCCGTGTGATTCCCGAGAAGCAACAGGTTCATCATGCCAT
TCGACGTGCTCTGGATAGCCACGATACCGTCGAGGTGGAGGCTGCCATCT
ATGCCAGCAGCTGCTTTGCCGCCCAGTCAAGTTCCTTTGCCATCAGCATG
TGCGCCAAGATTTCGGACATGATCGAATCGCTTCAGGTGCCGGTGCCAAT
GAAGCTGCTCCTGATTCCCGTGTTGCGACACATGCATCACGAGGCTACCA
CAGCGTCACTGGTTAGCAGACTGTGCATGGATCTGCTGCCCAAATATCCA
GCCCAGAGCTTTGTGGTGGCCATCATAGACACGCTCACTCAATTGTCATC
ACGAACGCTGGTGGGAGTGCCCGGTCAGCTGGATGTTCTGCTGGATTTCA
TGCAGGACTTAAGGACACCAGTACGCATACAGGTGCTGCGATCTTTCAAC
GAGTTGGCCGGACGTCAGAGCGTTCATGCCTGGCCCAAGCCAGCCATCAA
AGCGCTCATTGATCGTTTTGAATTGTGTACCAATTCCAAGGAGCAGTTCC
TCTTCCTCTCAATCCTGCTGAAGTTAAGCGAGTGCCCGCTTACTTGCCAG
CAGCTGCTTCGCGAGCATCGCGTAGCCCTGCTCCGTTTGTGCATCCAGTG
CATTAGCAAGCTGGACGACTACACCACCGCCACTCAGGCCATGGCAGTTT
TGTCGGTTCTAGTAGCATTTGGTTTAAAAAAAAAGGGCAGCGGCGAGCAG
GTGGACGATATTCTTCATATGGTCAACCTGCACATGGAAGGATTGCTCCT
TTGCACGGCCAAGCGGTCGGAGTGCACCCGCGATCTCCGTAGGGTGCTGA
CATACGGTATAAGGATCACTAAAGCCAACGCTGAATTTGGAACATCCTTC
ATTGGGATCGTGACCAATAGCCTGGGAGATAAGGGTGCCTATCCGCCAGC
CAATGCGGAACTTATGTGCGAGGCACTGGCGGGTCTGTGTGAGCACTTTC
AGCTGCGTAAGTACGCCTTTTCCACCGCAGAAGATTTGATAGTAGACGAA
AACGCGATGGACACCGATGAGTTGCCCCCGCCCAAGATAAATCCCATGCT
AGCTCGTTTGCCGCTCATTCTGCACAAGCTGAACACCATTATCGACCAGG
AGAATTGCGATCAACAGTTGCGCAGCGTGGAGATCCTGAGTTCTCTGGTT
CTACAAACCACCATGGGCTGTTACCTGCCGCAAAAGGTTGTTCAGTGCTT
TGAGAAATGCCTCGGTAGGCTTAACTGCTGGACGCTGTATAGGATTGCAC
GCACTGCTAGTCGCTATGGTCACCACTATGTGGCTGCTCACATTTACACC
AAGGTCTCCCAGATTGTGATCAGCGATCATATGCACTATTTCCTGGTGGC
ACTGTCGCAGATCTCGCAGGCGGAGTGCATTCTTAACTATGGCTTGGAAT
ACGCCTACATGCGGGACAATTATGCACCAAAGGTGGCACCGGAACCTCTA
ATTCCGCTGATGAAGCGCTTGGAAATGGCTAGTAATCTCTATCAGCAAGC
GCTGGCCAGCCTGCGAGCTGGCTCCTCGCCCCAGCATCCGTGCACCTTTC
AGTTGGAGTATCTGAAGATAAGGGCGCAGTTTCTGCAGACCCTTCACCTG
GCTGTGACCGTAAAGAATGCCCAGGTGATTGTGCCGCCACCGGCAATAGC
TGGAAGTTTGGCCCAGAACTCGCGCGACTATCTGCAAAAGTTTGGTCATG
TCACGAACCAGCTGCGCAAGCTGGTGAAGGCACTAAAGGCCTGCGAGGAG
ACTTACGCTAGGCTATACAAATCCTCTTTCGATGCGGATCACGTGACGCT
GGAGTTTCTGGAGGTGGCTGAATTTCAGTGCGCTCTTTTCGCCCACATCA
TCGAGTCGATTTGCTACGCCACGCCTCCGGAACCGCCTGTATTTCTAACC
ACAGGCGATCACCCGGAGACGCGCTACTTTGCCGCAAGCTGCCAGCGCAT
GGAGCAGATGCAAAAAAACCTGCCACAGGAGCCGGCCAATGCCAAGACCA
TTAGTAACCGACATTTGGATGTCATCATTGCGCAGATCGAGATCATAACA
AAGACACCGCTCTGCCTGCCGCGTTACTTCTTCCAGATTCTGCAGTCCAC
ACAGATCAAGCTATCGGTGAGTCCGCAGCCAAGGAGCGCCACCGAACCCG
TGAATGTCCAGTCGGGCAGTAATCTGGTTATCAAGGTCGAGGGTGTCCTG
CAGCACTTTAGCAAGCAGAAGAAACACTTCCGTCGCGTGGAGTCCGTTCA
ATTAAGCCTCACCTCACAGCTAATCACGCCGCCACCGCGATCCTCGCAAG
AGCTGCCCAAGCAGGGCGCCAACGATACTGTGACCCTCAATCAGATTGTA
AAGCCCCAGCGCGATTTCCTCTCCGGCAGCTTCCTGTTGCCCATCTCCAA
TGGCGGGCACTTCCAGGTGACGCTGGAAACATTCGTGGTGGACGAGAATG
GCATTACCTGGTGCACTGGCCCCAAATCCTCGATGGTGGTGCGGGTGCTG
GAGGATCCTAGCAAGCAGGGCGCTCCAGCGCCGAGCACTTCCCAGGCAGT
GGGACAGACGAGGAGGTTTTAAAAGCTTTCTAGACCAT
BS25353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| defl-RA | 3006 | CG18176-PA | 1..3006 | 17..3022 | 15030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| defl-RA | 3227 | CG18176-RA | 119..3126 | 16..3023 | 15040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9725067..9726605 | 1485..3023 | 7695 | 100 | Plus |
| 3L | 28110227 | 3L | 9723541..9725011 | 16..1486 | 7355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:21:34 has no hits.
BS25353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 10:05:36 Download gff for
BS25353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| defl-RA | 116..3119 | 17..3020 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:55 Download gff for
BS25353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| defl-RA | 120..3123 | 17..3020 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:50 Download gff for
BS25353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| defl-RA | 120..3123 | 17..3020 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:50 Download gff for
BS25353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9723542..9725011 | 17..1486 | 100 | -> | Plus |
| 3L | 9725069..9726602 | 1487..3020 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:55 Download gff for
BS25353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9716642..9718111 | 17..1486 | 100 | -> | Plus |
| arm_3L | 9718169..9719702 | 1487..3020 | 100 | | Plus |
BS25353.pep Sequence
Translation from 16 to 3021
> BS25353.pep
MSHLTGTRVSTFNESFLNENEHDSNAVLMELDKGLRSTKQGIQCEAVVRF
PRLFEKYPFPILINSSFIKLADYFVSGSNLLRFWVLRVCQQSENHLDKIL
NIDSFVRCIFVVMHSNDPVARALLLRTLGAVSRVIPEKQQVHHAIRRALD
SHDTVEVEAAIYASSCFAAQSSSFAISMCAKISDMIESLQVPVPMKLLLI
PVLRHMHHEATTASLVSRLCMDLLPKYPAQSFVVAIIDTLTQLSSRTLVG
VPGQLDVLLDFMQDLRTPVRIQVLRSFNELAGRQSVHAWPKPAIKALIDR
FELCTNSKEQFLFLSILLKLSECPLTCQQLLREHRVALLRLCIQCISKLD
DYTTATQAMAVLSVLVAFGLKKKGSGEQVDDILHMVNLHMEGLLLCTAKR
SECTRDLRRVLTYGIRITKANAEFGTSFIGIVTNSLGDKGAYPPANAELM
CEALAGLCEHFQLRKYAFSTAEDLIVDENAMDTDELPPPKINPMLARLPL
ILHKLNTIIDQENCDQQLRSVEILSSLVLQTTMGCYLPQKVVQCFEKCLG
RLNCWTLYRIARTASRYGHHYVAAHIYTKVSQIVISDHMHYFLVALSQIS
QAECILNYGLEYAYMRDNYAPKVAPEPLIPLMKRLEMASNLYQQALASLR
AGSSPQHPCTFQLEYLKIRAQFLQTLHLAVTVKNAQVIVPPPAIAGSLAQ
NSRDYLQKFGHVTNQLRKLVKALKACEETYARLYKSSFDADHVTLEFLEV
AEFQCALFAHIIESICYATPPEPPVFLTTGDHPETRYFAASCQRMEQMQK
NLPQEPANAKTISNRHLDVIIAQIEIITKTPLCLPRYFFQILQSTQIKLS
VSPQPRSATEPVNVQSGSNLVIKVEGVLQHFSKQKKHFRRVESVQLSLTS
QLITPPPRSSQELPKQGANDTVTLNQIVKPQRDFLSGSFLLPISNGGHFQ
VTLETFVVDENGITWCTGPKSSMVVRVLEDPSKQGAPAPSTSQAVGQTRR
F*
BS25353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| defl-PA | 1001 | CG18176-PA | 1..1001 | 1..1001 | 5136 | 100 | Plus |
