BS25370.complete Sequence
2033 bp assembled on 2011-08-05
GenBank Submission: KX804924
> BS25370.complete
GAAGTTATCAGTCGACATGTCCACGATAGACGCGCTCTACAATCGTCCTG
GGCCCAACCGCCTGCGGCAGGCGGATGCCTATCGCACCACCAATCGTCAG
GATGCCGTCAAGATTCGTATGGCCAAGGATGGAATCGGCGCAGAGGAGCC
CATCTCCGTGCCCGGCCTGCTGAAGCGTACGGTCAACAATTACGGCGACT
ATCCTGCGCTGCGCACCAAGAACGGCAAAAACGGATATCACACTGTCACC
TACAAACAATATGAGCAGAAGGTGCACCAGGTGGCCAAGGCGTTCATTAA
GCTCGGTCTGGAGGAGCACCATTCGGTGGGTGTGCTGGCCTTCAATTGCG
CCGAATGGTTCTACTCGGCCATGGGCGCCATTCACGCACGAGGCATCATC
GCCGGAATCTACACCACCAATTCCGCCGATGCAGTGCAGCACGTTCTGGA
GAGCTCACATGCCCAAATCGTGGTCGTCGACGACGCCAAGCAAATGGACA
AGATTCACGCCATTCGCGACAAGCTGCCCAAGCTCAAGGCCGCCATTCAG
ATCCAGGAGCCCTATTCCCCCTACTTGAAGAAGGAGGATGGCTACTACAG
GTGGTCGGAGATCGAGTCGATGAACGTTAGCGACGTGGAGGATCAGTACA
TGACCCGTTTGGAGAATGTGGCGATCAACGAGTGCTGCTGCCTGGTCTAC
ACCTCCGGAACGGTGGGCATGCCCAAGGGCGTGATGCTCTCCCACGACAA
CATCACCTTCGATGTGCGCGGCATCGTCAAGGCCATGGACCGTGTGGTGG
TTGGGGCGGAGTCGATCGTCTCCTACCTGCCACTTTCGCACGTGGCCGCC
CAGACCGTGGACATTTACACCTGCGCCTTTGTGGCGGGCTGCATTTGGTT
CGCCGACAAGGATGCGCTGAAGGGAACGCTGGTGAAGTCGCTGCAGGATG
CGCGACCCACGCGATTCATGGGCGTGCCGCGTGTGTACGAGAAGTTCCAG
GAGCGAATGGTCGCCGTGGCCAGTTCCAGCGGCAGCCTGAAGAAGATGCT
CGCCAGCTGGGCCAAGGGCATCACGCTGAAGCACTACATGGTGAGTCAAG
GCAAGAGCTCCGGGGGATTCCGGTACAAGATTGCCAAGTCGCTCATCATG
TCCAAGGTGAAGCAGGCCCTGGGCTTCGATCGCGTCCTTACACTGGCCAG
TGCGGCAGCTCCCATGTCGCCGGAGACGAAGAAGTACTTCCTCAGTCTGG
ACCTGAAGATTGTCGATGCCTTCGGCATGTCGGAGACGGCCGGTTGCCAC
ACCATCTGCCTTCCCGATTCTGTGGGCCTGAACACAATTGGCAAAACTTT
GCCCGGCTGCGAGTCCAAGTTCATCAACAAGGATGCCAACGGTCACGGAG
AGCTGTGCATCCGAGGACGTCATGTTTTCATGGGCTACATCGACAACAAG
GAGAAGACCGAGGAGTCGCTGGATGACGACTGCTGGCTGCATTCCGGTGA
TTTGGGATTTGTTGATGACAAGGGTTATGTTTCACTGACGGGACGATCCA
AGGAGATCATCATTACCGCCGGCGGCGAGAACATTCCGCCAGTGCACATC
GAGAACACGATCAAGAAGGAGTTGGATGCCATTTCCAATGCCTTTTTGGT
GGGCGAGCAGCGCAAATATCTCACTGTTCTGATCACCCTTAAGACCGAAG
TGGACAAGGATTCCGGTGAGCCGCTGGACGAGCTTAGCCACGAGTCCTCC
GTGTGGGTGAAATCGCTGGGAGTGGAGCACAAGACCGTATCGGATATCCT
GGCCGCAGGTCCCTGCCCCAAGGTGTGGAAGTCCATCGAGGATGCCATCA
AGCGGGCCAACAAGCAGTCCATTTCCAATGCCCAAAAGGTTCAGAAGTTC
ACCATTCTGCCGCACGACTTCTCCATTCCCACCGGCGAACTTGGACCCAC
CCTAAAGGTTAAGCGCAACGTTGTGTCCAAGATGTATGCCGATGAGATCG
AGAAACTATATGCCTAGAAGCTTTCTAGACCAT
BS25370.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bgm-RC | 2001 | CG4501-PC | 1..2001 | 17..2017 | 9750 | 99.2 | Plus |
| bgm-RA | 2001 | CG4501-PA | 1..2001 | 17..2017 | 9750 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bgm-RC | 2464 | CG4501-RC | 143..2146 | 15..2018 | 9765 | 99.2 | Plus |
| bgm-RA | 2501 | CG4501-RA | 180..2183 | 15..2018 | 9765 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14018034..14018626 | 1101..1693 | 2785 | 98 | Plus |
| 2L | 23513712 | 2L | 14016537..14017037 | 601..1101 | 2475 | 99.6 | Plus |
| 2L | 23513712 | 2L | 14016132..14016477 | 256..601 | 1730 | 100 | Plus |
| 2L | 23513712 | 2L | 14018684..14019010 | 1692..2018 | 1620 | 99.7 | Plus |
| 2L | 23513712 | 2L | 14015794..14016034 | 15..255 | 1175 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:32:29 has no hits.
BS25370.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 10:05:46 Download gff for
BS25370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bgm-RA | 180..2180 | 17..2017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:22 Download gff for
BS25370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bgm-RA | 182..2182 | 17..2017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:28 Download gff for
BS25370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bgm-RA | 182..2182 | 17..2017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:28 Download gff for
BS25370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14015796..14016034 | 17..255 | 99 | -> | Plus |
| 2L | 14016132..14016477 | 256..601 | 100 | -> | Plus |
| 2L | 14016538..14017037 | 602..1101 | 99 | -> | Plus |
| 2L | 14018035..14018626 | 1102..1693 | 97 | -> | Plus |
| 2L | 14018686..14019009 | 1694..2017 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:22 Download gff for
BS25370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14015796..14016034 | 17..255 | 99 | -> | Plus |
| arm_2L | 14016132..14016477 | 256..601 | 100 | -> | Plus |
| arm_2L | 14016538..14017037 | 602..1101 | 99 | -> | Plus |
| arm_2L | 14018035..14018626 | 1102..1693 | 97 | -> | Plus |
| arm_2L | 14018686..14019009 | 1694..2017 | 99 | | Plus |
BS25370.pep Sequence
Translation from 16 to 2016
> BS25370.pep
MSTIDALYNRPGPNRLRQADAYRTTNRQDAVKIRMAKDGIGAEEPISVPG
LLKRTVNNYGDYPALRTKNGKNGYHTVTYKQYEQKVHQVAKAFIKLGLEE
HHSVGVLAFNCAEWFYSAMGAIHARGIIAGIYTTNSADAVQHVLESSHAQ
IVVVDDAKQMDKIHAIRDKLPKLKAAIQIQEPYSPYLKKEDGYYRWSEIE
SMNVSDVEDQYMTRLENVAINECCCLVYTSGTVGMPKGVMLSHDNITFDV
RGIVKAMDRVVVGAESIVSYLPLSHVAAQTVDIYTCAFVAGCIWFADKDA
LKGTLVKSLQDARPTRFMGVPRVYEKFQERMVAVASSSGSLKKMLASWAK
GITLKHYMVSQGKSSGGFRYKIAKSLIMSKVKQALGFDRVLTLASAAAPM
SPETKKYFLSLDLKIVDAFGMSETAGCHTICLPDSVGLNTIGKTLPGCES
KFINKDANGHGELCIRGRHVFMGYIDNKEKTEESLDDDCWLHSGDLGFVD
DKGYVSLTGRSKEIIITAGGENIPPVHIENTIKKELDAISNAFLVGEQRK
YLTVLITLKTEVDKDSGEPLDELSHESSVWVKSLGVEHKTVSDILAAGPC
PKVWKSIEDAIKRANKQSISNAQKVQKFTILPHDFSIPTGELGPTLKVKR
NVVSKMYADEIEKLYA*
BS25370.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bgm-PC | 666 | CG4501-PC | 1..666 | 1..666 | 3452 | 100 | Plus |
| bgm-PA | 666 | CG4501-PA | 1..666 | 1..666 | 3452 | 100 | Plus |
| CG4500-PA | 681 | CG4500-PA | 2..680 | 14..665 | 1522 | 44.2 | Plus |
| CG3961-PD | 654 | CG3961-PD | 81..650 | 74..665 | 420 | 23.8 | Plus |
| CG3961-PE | 666 | CG3961-PE | 93..662 | 74..665 | 420 | 23.8 | Plus |
