BS25372.complete Sequence
2162 bp assembled on 2011-08-05
GenBank Submission: KX804687
> BS25372.complete
GAAGTTATCAGTCGACATGCCGTCGCTGCGCCAGAAAGTCACCACTTACT
TCCGCCAGTTGAGCTTCATCGCGGAGCCTCGCGAGGGTCGCCGGCGGGCC
AGCGAGCACGAGGATGATGATGGTAGCTTCATAACTAAATATCTGGAGGG
CCGAATGCAGCGTCAGTTTGTTGAGGGTCCGGAGATTTACAATGGCCAGA
ATCCCACGGACATGCCCGTTCTCAAGTTGGATACATACGAAGCTGGAAAC
TGCTCTATAACAGCCGCCTGCACAGGTCCTGACGAGGGGCTCACCGGCAT
CAAGCGCTCCAAACTGCACTTGAGCACCAGCTTCGCGGATGACATTGACT
TCATAGATACGCAGCAGGAGAACGATGATTGCTATGGCGTTAGGAGGAGT
ACACCACCAGTTCAGGTGGCCACACAGAACTCAACCCGACTTACCAGCAA
ATTCGGACGGCCGCCGGCAGGACCTCGCAGACAGAGCAGTGCGGAGCAGC
CCTCCGGATCTGCTTCTGCGTCGGGAATGCGTTCCCGCAAGAATTCCAAA
AGCAGCATAGCCAATCTGGCCGCTGCGTCTGCTGGCACGGATGCTGGAAA
AGCCAACAGCGATCAGAACAATAGGAATGTGTTAAATGCAAAGACTGAGG
TCTCGACGGATGGGGATCCCAACTCAGAGCGGGAACGTTTGCTCCGCGAA
GCTGTAAGCAACCAGGGTGGCTCTGATCCCGCAGCTTTGATCGCTGGCGT
GGAGAACTGGCGCATGGAGTGCGACTTCGCATATGGTATCTCGGTGTCCC
TCTACGAGACCAACATGCTGACTAAAGAACCCATGGGCAATCCCATCGCC
GACTGCTACGGAATGGTAGTGCGCGGAGACTCAGCTGCCATGGCCATGGC
AGATGGTGTCAACTGGGGTGATGGCGCTCGTCTGGCCGCCCGTTCAGCTG
TTCACGGTTGTTTGGACTATCTGGACCGGGCGGTCTTCGGACAGGCGCTG
GAGTGCCGAGCCACCACAACCCAGGAGGTTTTTGTGAGTTTGCTGCGTAG
TCTTTGGGAGGGACACGGTTGTATCCTGGAAGTTGGAGGAGCCCTATCTA
CTCTCACCATAGCCGTTGTGCTGCCGCTGGACGGAGCGCCAGGGAAATAT
GTCGTGTGCTCGTGTAATGTTGGCGATTCCCTGGGCTATGTGTACTCCAA
GAAGCACGGAGTACGGGAACTAACACAGGCATCCCACGACATCAGTTCCA
TGAGGGACATGCGCGATGCGTTGGGTGCCCTTGGACCGGCGGATGGCAAC
AAGCCAGAGCTGAGCAATCTAACCTTCTCGATGACCTGCATTGAAAGTGG
AGACATAGTCTTTTTAACGTCGGATGGAATCAGCGATAACTTCGATCCAG
TTGTGGGCAAGTTTGCCGAAGCCTGGACTCCGGATGTTAAGCTTCAGACG
TCGGGACATGTCAAGCCCGCCAACTTGGCACCCAAACGGCAGAACAAGAG
TGCATCCGCCATCTATGCCCGTCTGCATCCTTCGACTCCGCCCACGCGAC
CAGCTCGTCAGTCCAAGGCGGAAAGTCCGCCTAATAATGCGCCTAGTCGA
CCAAAGTATATGCGCTCCCAAACGCTTATTGAACCACGCCAGGGATTGGT
ATCAGCTCCACCGCCATCGGTGGTGCCCCAACGCATTCCGAAGTCCATTT
CAGGACTGCCCCTTGTTACCGGTCCCCAGCGGCATGCTCTTACCCTCTAC
CGCTTAGAGGATCTGCTCAGCTATGGCATCAACGGCACGTTTTCGCCCTG
CGTATCGGCACGCAGGCTCTGCCACTTGCTTATCGATTTTGTACGGATGA
TAACGTCAGCCAGGAGGAAGACCCTGGAGCAAAGGGAACTCTTCTATAAA
CTCTCTACGGGACCAGATGGCGCCAAGCGTGAGGTGCAACTGAACCGCAT
GCAGCATCGCGCGGCCAGGAAGCGTGTGGTGGACAGCAGCGCCTTTGTAG
CATTGCCCGGGAAATTGGATCATGCCACTGTGATGGCCTACACGGTGGGC
GGCGGAGAGGAGCACAATAATGGAAATGAAAACGGCGATGGGGGAGCTAT
TTCGCCTGTACTGCAATCCAAGGAGTTCAAGGAGACGAATTTCTGAAAGC
TTTCTAGACCAT
BS25372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9801-RC | 2130 | CG9801-PC | 1..2130 | 17..2146 | 10650 | 100 | Plus |
| CG9801-RB | 2130 | CG9801-PB | 1..2130 | 17..2146 | 10650 | 100 | Plus |
| CG9801-RA | 2130 | CG9801-PA | 1..2130 | 17..2146 | 10650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9801-RC | 3294 | CG9801-RC | 331..2461 | 17..2147 | 10655 | 100 | Plus |
| CG9801-RB | 3327 | CG9801-RB | 364..2494 | 17..2147 | 10655 | 100 | Plus |
| CG9801-RA | 3476 | CG9801-RA | 513..2643 | 17..2147 | 10655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8736712..8738709 | 2147..150 | 9990 | 100 | Minus |
| 3R | 32079331 | 3R | 8738778..8738911 | 150..17 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:23:56 has no hits.
BS25372.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 10:05:38 Download gff for
BS25372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9801-RC | 306..2434 | 17..2145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:56 Download gff for
BS25372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9801-RA | 513..2641 | 17..2145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:40 Download gff for
BS25372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9801-RA | 513..2641 | 17..2145 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:40 Download gff for
BS25372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8736714..8738708 | 151..2145 | 100 | <- | Minus |
| 3R | 8738778..8738911 | 17..150 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:56 Download gff for
BS25372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4562436..4564430 | 151..2145 | 100 | <- | Minus |
| arm_3R | 4564500..4564633 | 17..150 | 100 | | Minus |
BS25372.pep Sequence
Translation from 16 to 2145
> BS25372.pep
MPSLRQKVTTYFRQLSFIAEPREGRRRASEHEDDDGSFITKYLEGRMQRQ
FVEGPEIYNGQNPTDMPVLKLDTYEAGNCSITAACTGPDEGLTGIKRSKL
HLSTSFADDIDFIDTQQENDDCYGVRRSTPPVQVATQNSTRLTSKFGRPP
AGPRRQSSAEQPSGSASASGMRSRKNSKSSIANLAAASAGTDAGKANSDQ
NNRNVLNAKTEVSTDGDPNSERERLLREAVSNQGGSDPAALIAGVENWRM
ECDFAYGISVSLYETNMLTKEPMGNPIADCYGMVVRGDSAAMAMADGVNW
GDGARLAARSAVHGCLDYLDRAVFGQALECRATTTQEVFVSLLRSLWEGH
GCILEVGGALSTLTIAVVLPLDGAPGKYVVCSCNVGDSLGYVYSKKHGVR
ELTQASHDISSMRDMRDALGALGPADGNKPELSNLTFSMTCIESGDIVFL
TSDGISDNFDPVVGKFAEAWTPDVKLQTSGHVKPANLAPKRQNKSASAIY
ARLHPSTPPTRPARQSKAESPPNNAPSRPKYMRSQTLIEPRQGLVSAPPP
SVVPQRIPKSISGLPLVTGPQRHALTLYRLEDLLSYGINGTFSPCVSARR
LCHLLIDFVRMITSARRKTLEQRELFYKLSTGPDGAKREVQLNRMQHRAA
RKRVVDSSAFVALPGKLDHATVMAYTVGGGEEHNNGNENGDGGAISPVLQ
SKEFKETNF*
BS25372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9801-PC | 709 | CG9801-PC | 1..709 | 1..709 | 3681 | 100 | Plus |
| CG9801-PB | 709 | CG9801-PB | 1..709 | 1..709 | 3681 | 100 | Plus |
| CG9801-PA | 709 | CG9801-PA | 1..709 | 1..709 | 3681 | 100 | Plus |
