BS25383.complete Sequence
1232 bp assembled on 2011-07-25
GenBank Submission: KX803156
> BS25383.complete
GAAGTTATCAGTCGACATGAATCGCTTCGCTTATGTGGAGGCCCGTCTGA
GTCCCAATGAATCCTTCGTCAGCCGCGACAACAGGGTAAAAATATACGAT
GGCGACCAAAAGACGGACTTTGAAGACGGCGAAGTGGTGCTCACCACACA
CCGACTGTTTTGGGGTCGCCCTGGAGAGATTGCCCGGGCCGCCGTAACAC
TTTGCCTGCCACTCAGCTATGTGATATCCGTCAGCGAAGAGACTACTGCC
TCTAACTTCTTTGGCCGCAAGACTCGCATAATCATGCATCTGCATCCTCC
AACGTCGGACAAAGGACCCGGCCCACTGGACACCAGTCGCGCCACCCACA
TCAAACTGTCGGGCAAGAATGGCCTGAGTGTCGAGTTCCACAGTGCCTTG
CGGGAGACTCTAAATGCCCGCGTCTGGGAAATCCTCTTGACCAGCGAGAT
CATCATCAATGGCGTGGCCAGCAGTCCAACCTTGGAGCCTGCCAACGACA
GGCTGGCCCGCATTCAGAAGAGGACAGGAATTGGGGGCATCGAACGGCAT
TTGGAGGCAAAAGCCAAGGCCACGGATGAGAACATAGCACTTGCCTTTCA
GGATCTCAGTGTTCTAATGGCCATGGCCAAGGACATGGTAGGAGTGTCCA
AGACAATAAGCAGCAAGATACGCAAACAGAAGGGAGAAATATCTGACGAT
GAAACGGTGCGTTTCAAATCCTACCTCATGAGCCTGGGCATCGATGATCC
CGTCACGCGGGACAACTTTACCAGCAATTCTGCCTACTTCAGTAGCCTGG
CCCGACAGATTTGCGAAATGCTGCTGGATCCTATCGAGGAGCAAGGTGGC
ATGATGTCCTTGGCTGATGTCTACTGTCGTGTAAACCGCGCTCGTGGTCT
GGAACTGCTATCGCCTGAGGACTTGCTGCACGCCTGCGAGCAGCTTAGTG
GTCCAATACGCCTGCGCAGCTTTCCCAGTGGCGCTAGAGTGCTACAACTG
GAGTCCCACGATGATGCCCTAATTGCCGTTGACACATTGGAGAAGGTGGA
GGCTGCCGAGTCTCTGGCTGTGGAGGAACTGGCCAAGCAGCTGGGAATTT
CACTCCTGCTGGCCAAGGAGCGATTGCTAGTGGCCGAACGTTTGGGCAAG
GTGTGTCGCGACGAGTCCGTAGAGGGACTGCGGTTCTATCCAAATCTTCT
GCTAGGCCGGGACTAAAAGCTTTCTAGACCAT
BS25383.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps36-RA | 1200 | CG10711-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps36-RA | 1346 | CG10711-RA | 89..1288 | 17..1216 | 6000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13512139..13512867 | 839..111 | 3645 | 100 | Minus |
| 3L | 28110227 | 3L | 13511704..13512083 | 1216..837 | 1900 | 100 | Minus |
| 3L | 28110227 | 3L | 13512929..13513024 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:10:58 has no hits.
BS25383.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-25 14:58:10 Download gff for
BS25383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps36-RA | 84..1281 | 17..1214 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:33 Download gff for
BS25383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps36-RA | 89..1286 | 17..1214 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:33 Download gff for
BS25383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps36-RA | 89..1286 | 17..1214 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:33 Download gff for
BS25383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13511706..13512081 | 839..1214 | 100 | <- | Minus |
| 3L | 13512140..13512865 | 113..838 | 100 | <- | Minus |
| 3L | 13512929..13513024 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:33 Download gff for
BS25383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13504806..13505181 | 839..1214 | 100 | <- | Minus |
| arm_3L | 13505240..13505965 | 113..838 | 100 | <- | Minus |
| arm_3L | 13506029..13506124 | 17..112 | 100 | | Minus |
BS25383.pep Sequence
Translation from 16 to 1215
> BS25383.pep
MNRFAYVEARLSPNESFVSRDNRVKIYDGDQKTDFEDGEVVLTTHRLFWG
RPGEIARAAVTLCLPLSYVISVSEETTASNFFGRKTRIIMHLHPPTSDKG
PGPLDTSRATHIKLSGKNGLSVEFHSALRETLNARVWEILLTSEIIINGV
ASSPTLEPANDRLARIQKRTGIGGIERHLEAKAKATDENIALAFQDLSVL
MAMAKDMVGVSKTISSKIRKQKGEISDDETVRFKSYLMSLGIDDPVTRDN
FTSNSAYFSSLARQICEMLLDPIEEQGGMMSLADVYCRVNRARGLELLSP
EDLLHACEQLSGPIRLRSFPSGARVLQLESHDDALIAVDTLEKVEAAESL
AVEELAKQLGISLLLAKERLLVAERLGKVCRDESVEGLRFYPNLLLGRD*
BS25383.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps36-PA | 399 | CG10711-PA | 1..399 | 1..399 | 2004 | 100 | Plus |
