Clone BS25393 Report

Search the DGRC for BS25393

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:253
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG18581-RA
Protein status:BS25393.pep: gold
Sequenced Size:536

Clone Sequence Records

BS25393.complete Sequence

536 bp assembled on 2011-07-25

GenBank Submission: KX803230

> BS25393.complete
GAAGTTATCAGTCGACATGCGTACTTTGTGTGCTCTAAGTTTGATCGCTT
TTATGGGCATAACCCTAATATCTACAAAGCCATTAGATGAATCTATCAAA
CCGAAAGTTTTAAGGCCACTAAATCAAGCGGATTTGGATAAAATGATAAA
AAACTTGCAGTTGCTTGAAAAATTAGCCAATGAGACATATTATTCACCAG
ATCCCACCAAAAAGGAGACATACTTAACGCAAGATCAAAAGGCGGAGGAA
ACTAAAGAGCCAACTGGAGAGGAAACCGAGGAACCTTCTGGAGAGGAAAC
TCACAGTCCTACGGGAGAGGAAACCAAAAGTCAAACTGGAGAAGATGGCG
AGTTCTTCGAAGATGAAGAGGAGGAAGATGAAGCGACTGTGGATAAACCA
ACTGATGTCATACCAGTTAATTTTCTAAAATATCCCGAGCACGAAGCTGA
TTTTAAGTCTTATCCAAGGTTTGCAATCCTTCGAAATGGCTATGTGCATC
ACATGAACTTGGACTTTTAGAAGCTTTCTAGACCAT

BS25393.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18581-RA 504 CG18581-PA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18581-RA 660 CG18581-RA 11..514 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15049696..15050199 520..17 2520 100 Minus
Blast to na_te.dros performed 2014-11-26 22:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
Helena 1317 Helena HEL 1317bp 38..76 68..30 105 74.4 Minus

BS25393.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-25 14:58:18 Download gff for BS25393.complete
Subject Subject Range Query Range Percent Splice Strand
CG18581-RA 11..514 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:07 Download gff for BS25393.complete
Subject Subject Range Query Range Percent Splice Strand
CG18581-RA 11..514 17..520 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:53 Download gff for BS25393.complete
Subject Subject Range Query Range Percent Splice Strand
CG18581-RA 11..514 17..520 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:53 Download gff for BS25393.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15049696..15050199 17..520 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:07 Download gff for BS25393.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15042796..15043299 17..520 100   Minus

BS25393.pep Sequence

Translation from 16 to 519

> BS25393.pep
MRTLCALSLIAFMGITLISTKPLDESIKPKVLRPLNQADLDKMIKNLQLL
EKLANETYYSPDPTKKETYLTQDQKAEETKEPTGEETEEPSGEETHSPTG
EETKSQTGEDGEFFEDEEEEDEATVDKPTDVIPVNFLKYPEHEADFKSYP
RFAILRNGYVHHMNLDF*

BS25393.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG18581-PA 167 CG18581-PA 1..167 1..167 875 100 Plus