Clone BS25396 Report

Search the DGRC for BS25396

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:253
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG32847-RB
Protein status:BS25396.pep: full length peptide match
Sequenced Size:548

Clone Sequence Records

BS25396.complete Sequence

548 bp assembled on 2011-07-25

GenBank Submission: KX805350

> BS25396.complete
GAAGTTATCAGTCGACATGTCGGCTGATACTTTCGTAATGGACACCAAGG
ATGAATCGTTCTACGAGTGTAACATATGTCTAGACACCGCCCAGAATGCC
GTGGTCAGCATGTGTGGCCATTTGTTTTGCTGGCCATGTCTGTACCAATG
GATATTGACGAAACCCGATCACACAGTGTGTCCCGTTTGCAAGTCGGGCG
TGGATAGGAGCAAAGTAATACCGGTGTACGCACGAAATGATAAAAGGCAG
GAGGATCCGCGGGATAAAACACCGCCGCGTCCAACTGGAATTTGGTCGGA
TTACGCAAATGATCTCGAGTTGGGACTATTTTCGTACTTGCTTTTTGGTT
TATTCTTTCCATATGGTGCCCTATCATCTTATCTGGATATGGACGAGCCA
CTCAATCCTGCTGCTGATCACGGCATAAGGGATGGGCAGAACGAAACACT
CCTTTCTAAGTTCTTTCTCTACGTGGCCATTATGCTCATTATTTATATGA
TTGTAATTTAGAAGCTTTCTAGACCATTCGTTTGGCGCGCGAAACGGG

BS25396.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32847-RB 495 CG32847-PB 1..495 17..511 2475 100 Plus
CG8974-RE 834 CG8974-PE 365..543 60..238 310 78.2 Plus
CG8974-RD 834 CG8974-PD 365..543 60..238 310 78.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32847-RB 730 CG32847-RB 51..545 17..511 2475 100 Plus
CG8974-RE 1317 CG8974-RE 468..646 60..238 310 78.2 Plus
CG8974-RD 1280 CG8974-RD 431..609 60..238 310 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15121622..15122116 17..511 2475 100 Plus
X 23542271 X 15794520..15794698 238..60 310 78.2 Minus
X 23542271 X 15797690..15797868 238..60 310 78.2 Minus
Blast to na_te.dros performed on 2014-11-26 22:11:44 has no hits.

BS25396.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-25 14:58:13 Download gff for BS25396.complete
Subject Subject Range Query Range Percent Splice Strand
CG32847-RB 51..549 17..514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:57 Download gff for BS25396.complete
Subject Subject Range Query Range Percent Splice Strand
CG32847-RB 51..549 17..514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:56 Download gff for BS25396.complete
Subject Subject Range Query Range Percent Splice Strand
CG32847-RB 51..549 17..514 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:56 Download gff for BS25396.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15121622..15122120 17..514 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:57 Download gff for BS25396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15114722..15115220 17..514 99   Plus

BS25396.pep Sequence

Translation from 16 to 510

> BS25396.pep
MSADTFVMDTKDESFYECNICLDTAQNAVVSMCGHLFCWPCLYQWILTKP
DHTVCPVCKSGVDRSKVIPVYARNDKRQEDPRDKTPPRPTGIWSDYANDL
ELGLFSYLLFGLFFPYGALSSYLDMDEPLNPAADHGIRDGQNETLLSKFF
LYVAIMLIIYMIVI*

BS25396.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32847-PB 164 CG32847-PB 1..164 1..164 897 100 Plus
CG8974-PE 277 CG8974-PE 117..274 10..161 438 51.3 Plus
CG8974-PD 277 CG8974-PD 117..274 10..161 438 51.3 Plus
CG8974-PB 277 CG8974-PB 117..274 10..161 438 51.3 Plus
CG8974-PA 277 CG8974-PA 117..274 10..161 438 51.3 Plus