BS25411.complete Sequence
941 bp assembled on 2011-07-25
GenBank Submission: KX801295
> BS25411.complete
GAAGTTATCAGTCGACATGGCACACGCCACGCCACAGGGCGTAAAGCTAT
TAAACGGATGGAAGCGTCCGGGTCGCTTTGACAAGGGTCTGGGAGCCCAG
CTGCCCGAGGCGTACAGGAAGTTCTGGCGCGAGTGGAAGCTGACGACCCC
GGCTGCGGTCCATTATATCCCCAAGGAGCAGCAGTGGGAACGAGATGAGG
TGACGCACGCCATCAAGCCGGTGCAGAACATCCCGCTGCCATTGATCGAT
ACGCCGGAATCGCACCGTGGCATCTGGGGTGGCGAGGCCGTGATCAAGGG
CTTTCAGAAACGCGAGCAAACAAAGCGTCGCGTGCCGCACTTTTGGGTAC
CAAATCTTAGGCGTTCGGTGGTCCATAGTCATGTGCTGGACTGCTACATG
TCCGTGGTGGTGACGGAACGCACGCTGGAGCAGATCCATGAATGTCATGG
CTTTGATCACTACCTCCTCAAGAATCGTGCCTGCGATCTTCGCTCCGCTT
TGGCTCTGAAACTCAAGCGAGAGGTGCTTCAGGCCCTGCAGAACGGTGTT
CCAGCCCTCGCCGACGAGCCCGAACGCCAACAGGAAGTGCTTAAGGAATA
CCGCCGCTATCTGGAACCATATACGCCCGAGGAAATCGATTGGTACGGCC
ATACCTATTTGGAGGCCATACGCAAGCTGCAAAAGCAGCTGCGCGAAGCG
GAAAAAGTGGTGCCGCATAAGTTGGAGTTCCGCGGAAAGCTTATCGAGCA
GCTGCGCCAGGCGGGGATCAGCGAAGCGGGAAAGCTGGAGAAGCCGGATG
CATTAGCAGCAGAATCGTCGGTCGAACACAAGGATTCGGATATCGAAGCG
CTTACAAAGCTGGAATCCTCCCCCTCTTCCAGTTGGCTGTCTAAAATCAA
TCCTTTCGGCAAGAAAGAAACCTAGAAGCTTTCTAGACCAT
BS25411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL28-RB | 909 | CG3782-PB | 1..909 | 17..925 | 4530 | 99.9 | Plus |
| mRpL28-RA | 909 | CG3782-PA | 1..909 | 17..925 | 4530 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL28-RB | 1170 | CG3782-RB | 162..1072 | 17..927 | 4540 | 99.9 | Plus |
| mRpL28-RA | 1138 | CG3782-RA | 162..1072 | 17..927 | 4540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4974274..4975101 | 35..862 | 4125 | 99.9 | Plus |
| 2L | 23513712 | 2L | 4975153..4975218 | 862..927 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:14:02 has no hits.
BS25411.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-25 14:58:19 Download gff for
BS25411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL28-RA | 160..1068 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:19 Download gff for
BS25411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL28-RA | 162..1070 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:04 Download gff for
BS25411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL28-RA | 162..1070 | 17..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:04 Download gff for
BS25411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4975153..4975216 | 862..925 | 100 | | Plus |
| 2L | 4974137..4974157 | 17..37 | 100 | -> | Plus |
| 2L | 4974277..4975100 | 38..861 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:19 Download gff for
BS25411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4974137..4974157 | 17..37 | 100 | -> | Plus |
| arm_2L | 4974277..4975100 | 38..861 | 99 | -> | Plus |
| arm_2L | 4975153..4975216 | 862..925 | 100 | | Plus |
BS25411.pep Sequence
Translation from 16 to 924
> BS25411.pep
MAHATPQGVKLLNGWKRPGRFDKGLGAQLPEAYRKFWREWKLTTPAAVHY
IPKEQQWERDEVTHAIKPVQNIPLPLIDTPESHRGIWGGEAVIKGFQKRE
QTKRRVPHFWVPNLRRSVVHSHVLDCYMSVVVTERTLEQIHECHGFDHYL
LKNRACDLRSALALKLKREVLQALQNGVPALADEPERQQEVLKEYRRYLE
PYTPEEIDWYGHTYLEAIRKLQKQLREAEKVVPHKLEFRGKLIEQLRQAG
ISEAGKLEKPDALAAESSVEHKDSDIEALTKLESSPSSSWLSKINPFGKK
ET*
BS25411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL28-PB | 302 | CG3782-PB | 1..302 | 1..302 | 1604 | 100 | Plus |
| mRpL28-PA | 302 | CG3782-PA | 1..302 | 1..302 | 1604 | 100 | Plus |
