BS25422.complete Sequence
992 bp assembled on 2011-07-25
GenBank Submission: KX803528
> BS25422.complete
GAAGTTATCAGTCGACATGGACCCCAGTCAACAGACGCCCCAGGAGACGG
TGGTGGCCCCCGTGGCCCCGCTGCTGGAGGATCAGCTGGAATTGGACATG
AAGCACTGCTTTGAGAACCTGATCGTCATCGACGTGGGTGCGAATCTGAC
CAACAAGAAGTATAGCCGTGATCTGGATTCCGTGGTGCAGAGAGCCAGAG
ACGCAGGTGTCCAGAAACTAATGGTTCACGGCACTTCGGTCAAATCGAGC
AAGGAAGCGCTGCGCCTTTCGCGCATCTATCCCGACATAATCTACTCAAC
TGCTGGCATTCACCCGCACGACTCCAAGTCCATCGTGGAAGAGCCGGCCA
CGTGGTTCGATCTGGAGCACATCGCCCAGGCGCAGGAGTGTGTGGCGATT
GGCCCCTGCGGCTTGGACTACCAGCGGGACTTCTCCGAACCGGACGCCCA
GAAGCAGATCTTCGCCAAGCAGCTGCATCTGGCCATCCGGCTAAATAAAC
CTCTGCTGATCCACGAGCGGTCGGCTCAGCTCGATTTACTCGAAATACTA
GACAAATTCGAGAATCTTCCGCCTGTGATCATCAGAGGTTTTATGGGCAC
CGCCGAGGAGGCGCTTAAGTACCTAGACCGGAGGTTCTACATCAGCCTGA
CGGGCTACCTGTGCAAGGACAAATCGGATACTGGCGTTCGCCGCCTGCTG
GAGGACGGCACATTGCCGCTAGACAGACTACTGGTGGAGACGGATGCTCC
TTTCATGTACCCAAACACAAGGGCTTCCAAGCTACCGCAACACGTGAAGA
CTGGTATCACCGAACGCTCATTGTTGTACTTACACAGATATTGTACCTTC
CAACGCAACGAGCCGTGCAGTTTGCCCGCCATTGTAGAGATGATAGCCGC
CTTCATGAAGAAAAGCCCGGACGAGGTGGCTTTGGCCACTGCCTTTAATG
CCCTGAAACTGTTTGGCTTGTCCTAGAAGCTTTCTAGACCAT
BS25422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3308-RA | 960 | CG3308-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3308-RA | 2124 | CG3308-RA | 286..1249 | 15..978 | 4820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21272487..21272839 | 555..203 | 1765 | 100 | Minus |
| 3R | 32079331 | 3R | 21272155..21272436 | 837..556 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 21273339..21273532 | 208..15 | 970 | 100 | Minus |
| 3R | 32079331 | 3R | 21271953..21272096 | 978..835 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:14:40 has no hits.
BS25422.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-25 14:58:21 Download gff for
BS25422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3308-RA | 286..1245 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:40 Download gff for
BS25422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3308-RA | 288..1247 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:21 Download gff for
BS25422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3308-RA | 288..1247 | 17..976 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:21 Download gff for
BS25422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21273341..21273530 | 17..206 | 100 | | Minus |
| 3R | 21272487..21272835 | 207..555 | 100 | <- | Minus |
| 3R | 21271955..21272093 | 838..976 | 100 | <- | Minus |
| 3R | 21272155..21272436 | 556..837 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:40 Download gff for
BS25422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17097677..17097815 | 838..976 | 100 | <- | Minus |
| arm_3R | 17097877..17098158 | 556..837 | 100 | <- | Minus |
| arm_3R | 17098209..17098557 | 207..555 | 100 | <- | Minus |
| arm_3R | 17099063..17099252 | 17..206 | 100 | | Minus |
BS25422.pep Sequence
Translation from 16 to 975
> BS25422.pep
MDPSQQTPQETVVAPVAPLLEDQLELDMKHCFENLIVIDVGANLTNKKYS
RDLDSVVQRARDAGVQKLMVHGTSVKSSKEALRLSRIYPDIIYSTAGIHP
HDSKSIVEEPATWFDLEHIAQAQECVAIGPCGLDYQRDFSEPDAQKQIFA
KQLHLAIRLNKPLLIHERSAQLDLLEILDKFENLPPVIIRGFMGTAEEAL
KYLDRRFYISLTGYLCKDKSDTGVRRLLEDGTLPLDRLLVETDAPFMYPN
TRASKLPQHVKTGITERSLLYLHRYCTFQRNEPCSLPAIVEMIAAFMKKS
PDEVALATAFNALKLFGLS*
BS25422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3308-PA | 319 | CG3308-PA | 1..319 | 1..319 | 1642 | 100 | Plus |
| CG3358-PG | 291 | CG3358-PG | 10..283 | 47..316 | 272 | 31.4 | Plus |
| CG3358-PF | 291 | CG3358-PF | 10..283 | 47..316 | 272 | 31.4 | Plus |
| CG3358-PE | 291 | CG3358-PE | 10..283 | 47..316 | 272 | 31.4 | Plus |
