BS25445.complete Sequence
935 bp assembled on 2011-07-25
GenBank Submission: KX802815
> BS25445.complete
GAAGTTATCAGTCGACATGATGACGCCCATGTGGATATCGCTGTTCAAAG
TCCTGCTGCTGCTGTTCGCCTTCTTTGCCACGACGTCCGCGGACAGTGCA
CCCTTCATGCCCATACCCACCCAGCACGACGATCCGACCCAGAAACAGAA
ACAGAATCAGAATCAATCTCCGATACCCGAAACGAACCGCCATTACCATC
AGTATCACAGCCTGATCCAACCAGATCAGTACTTCAAAGTGCAGCGCTCC
CCGAATGGAAAGCTGAATCTGGTCTTTAACGATACGTTCGTATCTTTGCA
GAGGACGGACACGGAGGTGCAATCCGAACAGCCGATACCCCCCCGACATC
CATCGGATACCTTTGTCTTCCCCGATTCCCCCATAGCCAAGTATCGGCCA
CCACAATCCCCAGCTCGTCCTTTGAGGAATGACACTAAGGAGCACAATCC
CTGCGCCAAGGATGAAAGCCAACACCTTAGAAACTTCTGCACGAATGTGG
ACGACTATCCGGACCTTTCAGGCCTCACACATAAGCTAAAAAACAACTTC
GCCAAGTTCTTTAGCAACGATCTTCAGCCCACGGATGTGAGCTCTCGCGT
TGGTGGCTCAGATGAGCGATTCCTTTGCAGGAGCATCAGGAAGCTGGTGT
ACCCAAAAAAGGGCTTGAGGGCGGACGACACCTGGCAGTTAATTGTCAAT
AACGATGAGTACAAACAGGCCATCCAGATCGAAGAGTGCGAAGGAGCGGA
TCAACCCTGTGACTTTGCCGCCAACTTTCCGCAGAGCTATAATCCAATCT
GCAAGCAGCACTACACACAGCAGACCCTGGCCAGCATCAAGAGTGATGGC
GAACTGGACGTGGTGCAGAATTCCTTCAAGATCCCCTCCTGCTGCAAGTG
CGCGTTGAAGACTGGGTGAAAGCTTTCTAGACCAT
BS25445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz-RB | 903 | CG6134-PB | 1..903 | 17..919 | 4425 | 99.3 | Plus |
spz-RA | 981 | CG6134-PA | 145..981 | 83..919 | 4095 | 99.3 | Plus |
spz-RD | 822 | CG6134-PD | 202..822 | 299..919 | 3015 | 99 | Plus |
spz-RA | 981 | CG6134-PA | 1..66 | 17..82 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz-RB | 2050 | CG6134-RB | 861..1764 | 16..919 | 4430 | 99.3 | Plus |
spz-RA | 2128 | CG6134-RA | 1006..1842 | 83..919 | 4095 | 99.3 | Plus |
spz-RD | 1969 | CG6134-RD | 1063..1683 | 299..919 | 3015 | 99 | Plus |
spz-RA | 2128 | CG6134-RA | 861..927 | 16..82 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27066099..27066480 | 741..360 | 1865 | 99.2 | Minus |
3R | 32079331 | 3R | 27066608..27066885 | 359..82 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 27065854..27066031 | 919..742 | 845 | 98.3 | Minus |
3R | 32079331 | 3R | 27069144..27069210 | 82..16 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:17:37 has no hits.
BS25445.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-25 14:58:27 Download gff for
BS25445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz-RB | 860..1761 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:19 Download gff for
BS25445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz-RB | 862..1763 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:47 Download gff for
BS25445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz-RB | 862..1763 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:47 Download gff for
BS25445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27065855..27066031 | 742..918 | 98 | <- | Minus |
3R | 27066099..27066480 | 360..741 | 99 | <- | Minus |
3R | 27066608..27066884 | 83..359 | 100 | <- | Minus |
3R | 27069144..27069209 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:19 Download gff for
BS25445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22891577..22891753 | 742..918 | 98 | <- | Minus |
arm_3R | 22891821..22892202 | 360..741 | 99 | <- | Minus |
arm_3R | 22892330..22892606 | 83..359 | 100 | <- | Minus |
arm_3R | 22894866..22894931 | 17..82 | 100 | | Minus |
BS25445.pep Sequence
Translation from 16 to 918
> BS25445.pep
MMTPMWISLFKVLLLLFAFFATTSADSAPFMPIPTQHDDPTQKQKQNQNQ
SPIPETNRHYHQYHSLIQPDQYFKVQRSPNGKLNLVFNDTFVSLQRTDTE
VQSEQPIPPRHPSDTFVFPDSPIAKYRPPQSPARPLRNDTKEHNPCAKDE
SQHLRNFCTNVDDYPDLSGLTHKLKNNFAKFFSNDLQPTDVSSRVGGSDE
RFLCRSIRKLVYPKKGLRADDTWQLIVNNDEYKQAIQIEECEGADQPCDF
AANFPQSYNPICKQHYTQQTLASIKSDGELDVVQNSFKIPSCCKCALKTG
*
BS25445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz-PB | 300 | CG6134-PB | 1..300 | 1..300 | 1628 | 100 | Plus |
spz-PA | 326 | CG6134-PA | 1..326 | 1..300 | 1591 | 92 | Plus |
spz-PL | 270 | CG6134-PL | 1..270 | 1..300 | 1422 | 90 | Plus |
spz-PD | 273 | CG6134-PD | 1..273 | 1..300 | 1189 | 78 | Plus |
spz-PC | 253 | CG6134-PC | 1..253 | 1..300 | 1181 | 78.1 | Plus |