Clone BS25447 Report

Search the DGRC for BS25447

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:254
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG15814-RA
Protein status:BS25447.pep: full length peptide match
Sequenced Size:998

Clone Sequence Records

BS25447.complete Sequence

998 bp assembled on 2011-07-25

GenBank Submission: KX803055

> BS25447.complete
GAAGTTATCAGTCGACATGCACCAGGAGCACATGGACCTGCATGAGCCCG
TGGACTTGAACAAGTCCCTGGACGAAATGACGCCGGAGGAGCGAATGCGA
GCGCAGCATCAACTGATGGTGGAGAAACATCGCGGCCACGATGCCATGCA
CTCCGAGATGGTGATCATTCTGTTCGTCACCCTGGTTATTGCCCAGATCA
TCCTGGTCGAGTGGAAGAAGCGGCACTACAGATCCTACGCTTTCGTCACC
CTGCTGGCCATGTGGCTCATTCCGCTGATCATCTCCTGCAGCTTCGGCTG
GCTGCGCTTCATAATCATCTGGCTGGTGTTCACCTGCATCACGGCACTGG
TTATGCGACGGGCCATCAGCAAGCCCATCCAGGGCACAACGCCTAGGCTG
GTCTACAAGTGGTTCTACTTCATCTACAAGCTCAGCTATGGCCTTGGCCT
GGTGGGCTATCTGGTGATCATAGCCGCCTTTCTGGGCATGAATTACATGT
TCTCACAGCCACCAAACACATGGATGGATGTGGGCCTGATGTTCTGCTTC
TACGGCCTGTACATCGGCGTCCTGGGGCGTGATATATCCGAGATATGTTC
GGATAAGATGGCGGCAGCTATTGGCTACTACACACCTCAGGGTATTCCAA
CACGACATCTTGATCAGAATGTCTGCGCAGTGTGTGGCAATCAGTTGCTG
GTCTCGGAGAAGGAAGAGGGCGTCATTGAGAACACCTACAAGTTGTCTTG
TAACCACGTATTCCACGAGTTCTGTATACGTGGTTGGTGCATTGTGGGCA
AGAAGCAGACGTGTCCCTACTGCAAGGAAAAGGTCGATCTCCAGAAGATG
TTCCGCAATCCCTGGGAGAAGCCGCACGTTTTGTACGGTCGCCTGCTGGA
TTGGATTCGTTGGCTGGTGGCCTGGCAGCCGCTCATCTTTTTCATAGTAC
AAGGCATCAACTGGATGCTGGGACTGGAGTAGAAGCTTTCTAGACCAT

BS25447.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15814-RC 966 CG15814-PC 1..966 17..982 4830 100 Plus
CG15814-RA 966 CG15814-PA 1..966 17..982 4830 100 Plus
CG15814-RB 966 CG15814-PB 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15814-RC 1740 CG15814-RC 244..1210 17..983 4835 100 Plus
CG15814-RA 1884 CG15814-RA 388..1354 17..983 4835 100 Plus
CG15814-RB 1664 CG15814-RB 168..1134 17..983 4835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17849413..17849711 397..99 1495 100 Minus
X 23542271 X 17848819..17849054 861..626 1180 100 Minus
X 23542271 X 17849117..17849347 625..395 1155 100 Minus
X 23542271 X 17848640..17848761 983..862 610 100 Minus
X 23542271 X 17849908..17849955 64..17 240 100 Minus
X 23542271 X 17849776..17849812 99..63 185 100 Minus
Blast to na_te.dros performed 2014-11-26 22:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Osvaldo 1543 Osvaldo OSV 1543bp 263..299 291..255 113 78.4 Minus

BS25447.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-25 14:58:24 Download gff for BS25447.complete
Subject Subject Range Query Range Percent Splice Strand
CG15814-RC 179..1144 17..982 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:42 Download gff for BS25447.complete
Subject Subject Range Query Range Percent Splice Strand
CG15814-RB 168..1133 17..982 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:14 Download gff for BS25447.complete
Subject Subject Range Query Range Percent Splice Strand
CG15814-RB 168..1133 17..982 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:14 Download gff for BS25447.complete
Subject Subject Range Query Range Percent Splice Strand
X 17849117..17849345 397..625 100 <- Minus
X 17849414..17849710 100..396 100 <- Minus
X 17849776..17849810 65..99 100 <- Minus
X 17849908..17849955 17..64 100   Minus
X 17848641..17848761 862..982 100 <- Minus
X 17848819..17849054 626..861 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:42 Download gff for BS25447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17743150..17743378 397..625 100 <- Minus
arm_X 17743447..17743743 100..396 100 <- Minus
arm_X 17743809..17743843 65..99 100 <- Minus
arm_X 17743941..17743988 17..64 100   Minus
arm_X 17742674..17742794 862..982 100 <- Minus
arm_X 17742852..17743087 626..861 100 <- Minus

BS25447.pep Sequence

Translation from 16 to 981

> BS25447.pep
MHQEHMDLHEPVDLNKSLDEMTPEERMRAQHQLMVEKHRGHDAMHSEMVI
ILFVTLVIAQIILVEWKKRHYRSYAFVTLLAMWLIPLIISCSFGWLRFII
IWLVFTCITALVMRRAISKPIQGTTPRLVYKWFYFIYKLSYGLGLVGYLV
IIAAFLGMNYMFSQPPNTWMDVGLMFCFYGLYIGVLGRDISEICSDKMAA
AIGYYTPQGIPTRHLDQNVCAVCGNQLLVSEKEEGVIENTYKLSCNHVFH
EFCIRGWCIVGKKQTCPYCKEKVDLQKMFRNPWEKPHVLYGRLLDWIRWL
VAWQPLIFFIVQGINWMLGLE*

BS25447.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15814-PC 321 CG15814-PC 1..321 1..321 1754 100 Plus
CG15814-PA 321 CG15814-PA 1..321 1..321 1754 100 Plus
CG15814-PB 321 CG15814-PB 1..321 1..321 1754 100 Plus
CG15814-PD 301 CG15814-PD 1..301 21..321 1644 100 Plus